Variant report

Variant	rs73307162
Chromosome Location	chr12:50995789-50995790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50992844..50995799-chr12:51006499..51009259,2	K562	blood:
2	chr12:50984662..50986250-chr12:50994111..50996016,2	MCF-7	breast:
3	chr12:50944577..50947139-chr12:50993451..50996143,2	MCF-7	breast:
4	chr12:50992473..50996334-chr12:50996356..50999257,4	MCF-7	breast:
5	chr12:50994951..50996590-chr12:51012616..51015184,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4293181	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1816169	chr12:50973897-51002088	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1817171	chr12:50973897-51002088	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1821299	chr12:50973897-51002088	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1822840	chr12:50973897-51015509	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50968800-50997400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:50969600-50997400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:50974000-51011800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:50979200-51013800	Weak transcription	Fetal Stomach	stomach
5	chr12:50979400-50997200	Weak transcription	Pancreas	Pancrea
6	chr12:50979400-50997200	Weak transcription	Spleen	Spleen
7	chr12:50981400-50997400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:50989400-50997600	Weak transcription	Fetal Intestine Small	intestine
9	chr12:50990200-50997400	Weak transcription	Colon Smooth Muscle	Colon
10	chr12:50991400-51006600	Weak transcription	Esophagus	oesophagus
11	chr12:50991600-50997000	Weak transcription	Ovary	ovary
12	chr12:50991600-50997200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:50991600-50998200	Weak transcription	Right Ventricle	heart
14	chr12:50991600-51009600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:50991600-51014000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr12:50991800-50997400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:50991800-51003200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr12:50991800-51003200	Weak transcription	Small Intestine	intestine
19	chr12:50991800-51006800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:50992000-50997200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:50992000-50997400	Weak transcription	Fetal Brain Male	brain
22	chr12:50992000-50999000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr12:50992000-51006600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:50992200-50997400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:50992200-50997600	Weak transcription	Brain Germinal Matrix	brain
26	chr12:50992200-51005400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr12:50992400-50997000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:50992400-50997200	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:50992400-50997200	Weak transcription	K562	blood
30	chr12:50992400-50997400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:50992400-50997400	Weak transcription	NH-A	brain
32	chr12:50992400-50997400	Weak transcription	Osteobl	bone
33	chr12:50992400-50998400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:50992400-51000200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr12:50992400-51000400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr12:50992400-51001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr12:50992400-51004200	Weak transcription	HSMMtube	muscle
38	chr12:50992400-51005400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:50992400-51005600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr12:50992400-51006600	Weak transcription	Psoas Muscle	Psoas
41	chr12:50992400-51007200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:50992400-51007400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr12:50992400-51007400	Weak transcription	Dnd41	blood
44	chr12:50992400-51009200	Weak transcription	Fetal Thymus	thymus
45	chr12:50992400-51009600	Weak transcription	Thymus	Thymus
46	chr12:50992400-51015200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr12:50992600-50999000	Weak transcription	NHEK	skin
48	chr12:50992800-51006800	Weak transcription	HSMM	muscle
49	chr12:50992800-51007200	Weak transcription	Hela-S3	cervix
50	chr12:50993000-50997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links