Variant report

Variant	rs73308326
Chromosome Location	chr17:37798554-37798555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37795949..37798919-chr17:37909347..37911771,2	K562	blood:
2	chr17:37797027..37799881-chr17:37822544..37824543,2	K562	blood:
3	chr17:37793922..37796197-chr17:37796263..37800246,4	MCF-7	breast:
4	chr17:37797245..37799083-chr17:37827034..37828829,2	K562	blood:
5	chr17:37792483..37795684-chr17:37797651..37799994,3	MCF-7	breast:
6	chr17:37796473..37799426-chr17:37809354..37812211,3	MCF-7	breast:
7	chr17:37796408..37798750-chr17:37816714..37819349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131748	Chromatin interaction
ENSG00000141744	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1050293	0.84[AFR][1000 genomes]
rs12937003	1.00[EUR][1000 genomes]
rs12942857	1.00[EUR][1000 genomes]
rs12943875	1.00[EUR][1000 genomes]
rs15968	0.84[AFR][1000 genomes]
rs2055859	1.00[EUR][1000 genomes]
rs2132140	1.00[EUR][1000 genomes]
rs2934958	0.97[AFR][1000 genomes]
rs2934960	0.90[AFR][1000 genomes]
rs2934961	0.84[AFR][1000 genomes]
rs2934962	0.84[AFR][1000 genomes]
rs2934963	0.84[AFR][1000 genomes]
rs2941510	0.84[AFR][1000 genomes]
rs2941511	0.84[AFR][1000 genomes]
rs2941513	0.84[AFR][1000 genomes]
rs2941514	0.90[AFR][1000 genomes]
rs2941515	0.97[AFR][1000 genomes]
rs2952139	0.90[AFR][1000 genomes]
rs2952149	0.87[AFR][1000 genomes]
rs34445181	1.00[EUR][1000 genomes]
rs34963535	1.00[EUR][1000 genomes]
rs57837184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59438000	1.00[EUR][1000 genomes]
rs59522915	0.97[AFR][1000 genomes]
rs67615144	1.00[EUR][1000 genomes]
rs68087665	1.00[EUR][1000 genomes]
rs7224588	1.00[EUR][1000 genomes]
rs73294088	0.97[AFR][1000 genomes]
rs73294092	0.97[AFR][1000 genomes]
rs73294095	0.91[AFR][1000 genomes]
rs73294098	0.91[AFR][1000 genomes]
rs73294102	0.83[AFR][1000 genomes]
rs73296106	0.90[AFR][1000 genomes]
rs73296109	0.80[AFR][1000 genomes]
rs73308310	0.83[AFR][1000 genomes]
rs73308323	0.90[AFR][1000 genomes]
rs73308329	0.87[AFR][1000 genomes]
rs73308333	0.90[AFR][1000 genomes]
rs7503843	1.00[EUR][1000 genomes]
rs8066399	1.00[EUR][1000 genomes]
rs8075130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv521294	chr17:37694709-37804858	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv908205	chr17:37709422-37830900	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	nsv457738	chr17:37770005-37831035	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv574991	chr17:37770005-37831035	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv516757	chr17:37781849-37834541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
12	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37794200-37798600	Enhancers	Spleen	Spleen
2	chr17:37794200-37800400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:37794200-37801000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:37794400-37800000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr17:37794600-37799000	Genic enhancers	Fetal Intestine Small	intestine
6	chr17:37794600-37801400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:37794600-37801600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:37794600-37801600	Enhancers	Right Ventricle	heart
9	chr17:37794600-37801800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr17:37794800-37798600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:37794800-37799400	Weak transcription	Osteobl	bone
12	chr17:37794800-37799800	Enhancers	Liver	Liver
13	chr17:37794800-37800000	Enhancers	Adipose Nuclei	Adipose
14	chr17:37794800-37800400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:37794800-37800600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:37794800-37800800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr17:37794800-37801200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:37795000-37798600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr17:37795000-37798600	Weak transcription	Esophagus	oesophagus
20	chr17:37795000-37798800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:37795000-37799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr17:37795000-37799200	Weak transcription	NHEK	skin
23	chr17:37795000-37799400	Weak transcription	NHDF-Ad	bronchial
24	chr17:37795000-37799600	Weak transcription	A549	lung
25	chr17:37795000-37799800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr17:37795000-37800800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr17:37795000-37800800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr17:37795000-37814000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:37795000-37823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr17:37795200-37799000	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr17:37795200-37799200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr17:37795200-37799400	Weak transcription	HMEC	breast
33	chr17:37795200-37799600	Enhancers	K562	blood
34	chr17:37795200-37799800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr17:37795200-37800000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:37795200-37800200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr17:37795200-37800600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr17:37795200-37801200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr17:37795200-37814000	Weak transcription	Aorta	Aorta
40	chr17:37795200-37814600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr17:37795400-37818000	Weak transcription	Fetal Kidney	kidney
42	chr17:37795600-37800400	Enhancers	Pancreas	Pancrea
43	chr17:37795600-37808600	Weak transcription	Fetal Lung	lung
44	chr17:37795800-37800800	Enhancers	Left Ventricle	heart
45	chr17:37796000-37798600	Enhancers	Fetal Intestine Large	intestine
46	chr17:37796000-37799200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr17:37796000-37801400	Enhancers	Right Atrium	heart
48	chr17:37796000-37803600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr17:37796200-37798800	Weak transcription	Colonic Mucosa	Colon
50	chr17:37796200-37799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links