Variant report

Variant	rs73308729
Chromosome Location	chr5:124367656-124367657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10036117	1.00[AMR][1000 genomes]
rs10065416	1.00[AMR][1000 genomes]
rs28421593	1.00[AMR][1000 genomes]
rs73308717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308743	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363000-124368000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:124363000-124368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:124363400-124367800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:124363400-124367800	Weak transcription	Gastric	stomach
5	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
6	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
7	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
8	chr5:124365800-124369600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:124367000-124369000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:124367600-124367800	Weak transcription	HSMM	muscle
11	chr5:124367600-124368200	Enhancers	NHDF-Ad	bronchial
12	chr5:124367600-124369000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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