Variant report

Variant	rs73309923
Chromosome Location	chr7:3533864-3533865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3528452..3531258-chr7:3533365..3536191,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12114017	1.00[AMR][1000 genomes]
rs28396741	1.00[AMR][1000 genomes]
rs56945505	1.00[AMR][1000 genomes]
rs57519297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57938715	1.00[AMR][1000 genomes]
rs59679657	1.00[AMR][1000 genomes]
rs60368813	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61445469	1.00[AMR][1000 genomes]
rs73293132	1.00[AMR][1000 genomes]
rs73293152	1.00[AMR][1000 genomes]
rs73293175	1.00[AMR][1000 genomes]
rs73293185	1.00[AMR][1000 genomes]
rs73294216	1.00[AMR][1000 genomes]
rs73294222	1.00[AMR][1000 genomes]
rs73294223	1.00[AMR][1000 genomes]
rs73294245	1.00[AMR][1000 genomes]
rs73294247	1.00[AMR][1000 genomes]
rs73294254	1.00[AMR][1000 genomes]
rs73294256	1.00[AMR][1000 genomes]
rs73294258	1.00[AMR][1000 genomes]
rs73294267	1.00[AMR][1000 genomes]
rs73294270	1.00[AMR][1000 genomes]
rs73296236	1.00[AMR][1000 genomes]
rs73296244	1.00[AMR][1000 genomes]
rs73296252	1.00[AMR][1000 genomes]
rs73296254	1.00[AMR][1000 genomes]
rs73296260	1.00[AMR][1000 genomes]
rs73296264	1.00[AMR][1000 genomes]
rs73296269	0.86[AFR][1000 genomes]
rs73296271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296276	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296288	1.00[AMR][1000 genomes]
rs73296291	1.00[AMR][1000 genomes]
rs73296295	1.00[AMR][1000 genomes]
rs73296301	1.00[AMR][1000 genomes]
rs73296330	1.00[AMR][1000 genomes]
rs73296331	1.00[AMR][1000 genomes]
rs73296344	1.00[AMR][1000 genomes]
rs73296357	1.00[AMR][1000 genomes]
rs73296358	1.00[AMR][1000 genomes]
rs73296760	1.00[AMR][1000 genomes]
rs73296766	1.00[AMR][1000 genomes]
rs73298214	1.00[AMR][1000 genomes]
rs73298370	1.00[AMR][1000 genomes]
rs73298373	1.00[AMR][1000 genomes]
rs73298374	1.00[AMR][1000 genomes]
rs73298379	1.00[AMR][1000 genomes]
rs73298387	1.00[AMR][1000 genomes]
rs73298397	1.00[AMR][1000 genomes]
rs73300393	1.00[AMR][1000 genomes]
rs73300394	1.00[AMR][1000 genomes]
rs73302308	1.00[AMR][1000 genomes]
rs73302316	1.00[AMR][1000 genomes]
rs73302318	1.00[AMR][1000 genomes]
rs73303045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303052	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303062	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303065	1.00[AMR][1000 genomes]
rs73303071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309905	1.00[AMR][1000 genomes]
rs73309930	1.00[AMR][1000 genomes]
rs7789842	1.00[AMR][1000 genomes]
rs7804193	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1015296	chr7:3381813-3560401	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv605902	chr7:3464896-3598581	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv887333	chr7:3475716-3542488	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv869723	chr7:3482682-3566293	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv464270	chr7:3490865-3581357	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605904	chr7:3490865-3581357	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1027426	chr7:3506255-3556395	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv538672	chr7:3506255-3556395	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1034716	chr7:3512406-3616155	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1801470	chr7:3521000-3541046	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1030469	chr7:3521036-3554820	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv538673	chr7:3521036-3554820	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv887334	chr7:3531275-3635105	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3528600-3535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3528600-3535600	Weak transcription	Aorta	Aorta
3	chr7:3532800-3534400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:3532800-3534800	Enhancers	HSMM	muscle
5	chr7:3533000-3534800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:3533000-3534800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:3533000-3535000	Weak transcription	Pancreas	Pancrea
8	chr7:3533000-3538600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:3533200-3534200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr7:3533200-3534200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr7:3533400-3536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:3533600-3534400	Enhancers	HUVEC	blood vessel
13	chr7:3533600-3534600	Weak transcription	HSMMtube	muscle
14	chr7:3533600-3534800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:3533600-3535200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:3533600-3535400	Weak transcription	Fetal Lung	lung
17	chr7:3533800-3535200	Weak transcription	H1 Cell Line	embryonic stem cell

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