Variant report

Variant	rs73311368
Chromosome Location	chr8:110139475-110139476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11986646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995096	0.92[EUR][1000 genomes]
rs16879035	0.92[EUR][1000 genomes]
rs4129683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61335240	0.92[EUR][1000 genomes]
rs6469232	0.91[EUR][1000 genomes]
rs73309523	0.92[EUR][1000 genomes]
rs73702770	0.86[EUR][1000 genomes]
rs7829028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110121400-110144600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:110138400-110140000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:110138400-110142600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:110138600-110139600	Enhancers	Osteobl	bone
5	chr8:110139200-110140800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:110139200-110141000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:110139400-110140200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links