Variant report

Variant	rs73311375
Chromosome Location	chr14:77820682-77820683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77819648..77821971-chr14:77835569..77838449,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10132619	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1017186	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11845842	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11850308	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850771	0.82[AMR][1000 genomes]
rs12881799	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12886056	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12887558	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12893462	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12894718	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17105724	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2111700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2160838	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2160839	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2160840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2364155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3759731	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56162150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67845205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7155184	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73311369	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8005730	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9671248	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
2	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:77806400-77838600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:77806600-77822200	Weak transcription	NHDF-Ad	bronchial
5	chr14:77807800-77822000	Weak transcription	Osteobl	bone
6	chr14:77808400-77830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:77809600-77825000	Weak transcription	Gastric	stomach
8	chr14:77809600-77842000	Weak transcription	HUVEC	blood vessel
9	chr14:77809800-77821200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr14:77810000-77838800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:77810600-77822200	Weak transcription	K562	blood
12	chr14:77810600-77825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:77810800-77823800	Weak transcription	Right Ventricle	heart
14	chr14:77811000-77821400	Weak transcription	Lung	lung
15	chr14:77811000-77824400	Weak transcription	Spleen	Spleen
16	chr14:77811200-77830000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:77811200-77835000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:77812800-77842000	Weak transcription	Pancreas	Pancrea
19	chr14:77813000-77827000	Weak transcription	Primary B cells from cord blood	blood
20	chr14:77813000-77835600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:77813800-77842400	Weak transcription	Aorta	Aorta
22	chr14:77814400-77821200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:77814400-77824400	Weak transcription	Fetal Kidney	kidney
24	chr14:77816600-77822200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:77816800-77822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:77816800-77823600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:77816800-77835600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:77817000-77826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:77817000-77842000	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:77817200-77822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:77817200-77825200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:77817200-77826600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:77817200-77827000	Weak transcription	GM12878-XiMat	blood
34	chr14:77817200-77840000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:77817200-77841600	Weak transcription	Brain Germinal Matrix	brain
36	chr14:77817200-77842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:77817400-77822200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:77817400-77822800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:77817400-77823600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:77817400-77830400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr14:77817400-77830600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr14:77817400-77835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:77817400-77835400	Weak transcription	Primary T cells from cord blood	blood
44	chr14:77817400-77841200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:77817600-77821400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:77817600-77821800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:77817600-77822000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:77817600-77822800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:77817600-77835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:77817800-77837600	Weak transcription	Fetal Intestine Small	intestine

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