Variant report

Variant	rs73312710
Chromosome Location	chr7:16677377-16677378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16672719..16682789-chr7:16684148..16689534,15	MCF-7	breast:
2	chr7:16676598..16678888-chr7:16684998..16686517,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106524	Chromatin interaction
ENSG00000136261	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17169551	1.00[AMR][1000 genomes]
rs73312714	1.00[AMR][1000 genomes]
rs73312733	1.00[AMR][1000 genomes]
rs73312749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv887759	chr7:16642995-16686940	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16636400-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:16643600-16681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:16644400-16677600	Weak transcription	Brain Substantia Nigra	brain
4	chr7:16644600-16678000	Weak transcription	Fetal Brain Male	brain
5	chr7:16646600-16683000	Weak transcription	Colonic Mucosa	Colon
6	chr7:16651800-16683600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:16655000-16682400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:16655400-16682600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:16655400-16682600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:16655800-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:16656000-16683400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:16656600-16677800	Weak transcription	Esophagus	oesophagus
13	chr7:16656600-16678000	Weak transcription	Aorta	Aorta
14	chr7:16656600-16680200	Weak transcription	Gastric	stomach
15	chr7:16656600-16682800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:16656600-16683600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:16656600-16683600	Weak transcription	Right Ventricle	heart
18	chr7:16656600-16684200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:16656600-16684200	Weak transcription	Lung	lung
20	chr7:16657200-16682800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:16657200-16683600	Weak transcription	Fetal Thymus	thymus
22	chr7:16657600-16683800	Weak transcription	Thymus	Thymus
23	chr7:16657800-16683000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:16658600-16683000	Weak transcription	Hela-S3	cervix
25	chr7:16660000-16682000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:16660400-16683600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr7:16660400-16683600	Weak transcription	NHEK	skin
28	chr7:16661600-16683400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:16661800-16683600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:16663600-16684000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:16664000-16683600	Weak transcription	HUVEC	blood vessel
32	chr7:16664200-16683800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:16664600-16682400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:16664600-16683200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr7:16664800-16681800	Weak transcription	Fetal Brain Female	brain
36	chr7:16664800-16682600	Weak transcription	HMEC	breast
37	chr7:16665000-16682800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:16665400-16682600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:16665800-16683400	Weak transcription	Placenta	Placenta
40	chr7:16666800-16678600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr7:16667400-16683600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:16667800-16683600	Weak transcription	NH-A	brain
43	chr7:16668400-16680000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:16673800-16679400	Enhancers	NHDF-Ad	bronchial
45	chr7:16674400-16677800	Weak transcription	Psoas Muscle	Psoas
46	chr7:16674400-16678000	Weak transcription	Fetal Intestine Small	intestine
47	chr7:16674400-16678000	Weak transcription	Right Atrium	heart
48	chr7:16674400-16680200	Weak transcription	Brain Anterior Caudate	brain
49	chr7:16674400-16682600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr7:16674400-16682600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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