Variant report

Variant	rs73313961
Chromosome Location	chr5:145456252-145456253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145455712..145457745-chr5:145463209..145465504,2	MCF-7	breast:
2	chr5:145456217..145460713-chr5:145463398..145466718,4	K562	blood:
3	chr5:145455824..145457469-chr5:145458591..145461118,2	K562	blood:
4	chr5:145454784..145457584-chr5:145457829..145461118,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10068337	1.00[AMR][1000 genomes]
rs56791671	1.00[AMR][1000 genomes]
rs73313970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313996	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315750	0.89[AFR][1000 genomes]
rs73315778	1.00[AMR][1000 genomes]
rs73315794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317821	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317836	1.00[AMR][1000 genomes]
rs73317844	1.00[AMR][1000 genomes]
rs73317870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145429600-145459600	Weak transcription	Stomach Mucosa	stomach
2	chr5:145442400-145461200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145443200-145458000	Weak transcription	Liver	Liver
4	chr5:145443600-145461000	Weak transcription	Colonic Mucosa	Colon
5	chr5:145448000-145460000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:145448400-145458000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:145450000-145458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:145450600-145461000	Weak transcription	Right Atrium	heart
9	chr5:145451000-145459800	Weak transcription	Esophagus	oesophagus
10	chr5:145451600-145458200	Weak transcription	NHEK	skin
11	chr5:145451800-145456800	Enhancers	Fetal Heart	heart
12	chr5:145451800-145459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:145451800-145459000	Weak transcription	HMEC	breast
14	chr5:145451800-145460000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:145451800-145460600	Weak transcription	Aorta	Aorta
16	chr5:145452200-145459400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:145453600-145459200	Weak transcription	Pancreas	Pancrea
18	chr5:145453600-145461400	Weak transcription	Right Ventricle	heart
19	chr5:145454200-145461000	Weak transcription	Left Ventricle	heart
20	chr5:145454600-145461000	Weak transcription	Fetal Brain Male	brain
21	chr5:145454800-145456600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr5:145455000-145456400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:145455200-145457000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:145455400-145456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:145455400-145456600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:145455400-145456800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr5:145455400-145456800	Enhancers	H9 Cell Line	embryonic stem cell
28	chr5:145455400-145456800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:145455400-145457000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:145455600-145456800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:145455800-145456400	Enhancers	Primary hematopoietic stem cells	blood
32	chr5:145455800-145456400	Enhancers	Duodenum Mucosa	Duodenum
33	chr5:145455800-145456800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:145455800-145456800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr5:145455800-145456800	Enhancers	Fetal Brain Female	brain
36	chr5:145456000-145456800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:145456200-145456400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:145456200-145456800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr5:145456200-145457200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr5:145456200-145457200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:145456200-145458000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr5:145456200-145458000	Weak transcription	Fetal Intestine Large	intestine
43	chr5:145456200-145459000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr5:145456200-145459200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr5:145456200-145459800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr5:145456200-145464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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