Variant report

Variant	rs733143
Chromosome Location	chr15:92718053-92718054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11074044	0.87[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1165	0.88[ASW][hapmap];0.90[GIH][hapmap]
rs4777722	1.00[CEU][hapmap];0.86[GIH][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55713251	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6496900	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs748853	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs748854	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs758133	0.99[EUR][1000 genomes]
rs758134	0.91[CEU][hapmap]
rs758135	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs886912	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs886913	1.00[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs733143	NGRN	cis	cerebellum	SCAN
rs733143	CIB1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:92708000-92718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:92708200-92719000	Weak transcription	Lung	lung
4	chr15:92711600-92727200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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