Variant report

Variant	rs73314790
Chromosome Location	chr8:111470112-111470113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58806744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60944189	0.86[AFR][1000 genomes]
rs73308968	1.00[AMR][1000 genomes]
rs73308972	1.00[AMR][1000 genomes]
rs73308978	1.00[AMR][1000 genomes]
rs73308987	1.00[AMR][1000 genomes]
rs73314794	1.00[AMR][1000 genomes]
rs73314797	0.86[AFR][1000 genomes]
rs73316011	1.00[AMR][1000 genomes]
rs73316502	0.86[AFR][1000 genomes]
rs73319507	1.00[AMR][1000 genomes]
rs73319524	1.00[AMR][1000 genomes]
rs73320474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320477	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322310	0.86[AFR][1000 genomes]
rs73322314	0.86[AFR][1000 genomes]
rs73322318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322320	0.86[AFR][1000 genomes]
rs73322323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324466	1.00[AMR][1000 genomes]
rs73324469	1.00[AMR][1000 genomes]
rs73324479	1.00[AMR][1000 genomes]
rs7835877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891291	chr8:111462136-111681660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111469600-111470600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:111469800-111470400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:111469800-111470600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:111469800-111471000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:111469800-111471000	Enhancers	HMEC	breast
6	chr8:111469800-111471200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:111470000-111470600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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