Variant report

Variant	rs73315072
Chromosome Location	chr10:50772199-50772200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50768064..50770893-chr10:50771784..50774255,2	K562	blood:
2	chr10:50770715..50773687-chr10:50775612..50777273,2	K562	blood:
3	chr10:50760754..50763367-chr10:50770167..50772403,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10450344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4253045	1.00[EUR][1000 genomes]
rs4253094	1.00[EUR][1000 genomes]
rs4253104	1.00[EUR][1000 genomes]
rs4253129	1.00[EUR][1000 genomes]
rs4253186	1.00[EUR][1000 genomes]
rs57865789	0.89[AMR][1000 genomes]
rs58788269	1.00[EUR][1000 genomes]
rs59862996	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60749172	0.89[AMR][1000 genomes]
rs73311046	0.89[AMR][1000 genomes]
rs73315042	0.89[AMR][1000 genomes]
rs73315047	0.89[AMR][1000 genomes]
rs73315061	0.89[AMR][1000 genomes]
rs73315065	0.89[AMR][1000 genomes]
rs73315070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315077	0.89[AMR][1000 genomes]
rs73315079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315085	0.89[AMR][1000 genomes]
rs73315096	0.89[AMR][1000 genomes]
rs73316905	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50768600-50773200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:50770000-50773000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:50770000-50773400	Enhancers	Osteobl	bone
4	chr10:50770200-50773400	Enhancers	Hela-S3	cervix
5	chr10:50770200-50773800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:50770400-50773200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:50770600-50772600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:50770800-50773200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:50771000-50772800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:50771000-50773400	Enhancers	HMEC	breast
11	chr10:50771200-50772800	Enhancers	NHDF-Ad	bronchial
12	chr10:50771200-50773000	Enhancers	HSMMtube	muscle
13	chr10:50771200-50773400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:50771600-50772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:50771800-50776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:50771800-50779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:50772000-50775600	Weak transcription	GM12878-XiMat	blood
18	chr10:50772000-50775600	Weak transcription	HSMM	muscle

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