Variant report

Variant	rs7331544
Chromosome Location	chr13:29659206-29659207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1006810	0.84[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs11620188	0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12873251	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1467578	0.89[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs1467579	0.86[JPT][hapmap];0.89[AMR][1000 genomes]
rs1536717	0.86[AMR][1000 genomes]
rs1536718	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs1536719	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs1536720	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs1575301	0.95[JPT][hapmap];0.89[AMR][1000 genomes]
rs1590277	0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17072796	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1887751	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs1887752	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs1927840	0.84[AMR][1000 genomes]
rs1927842	0.85[AMR][1000 genomes]
rs1927843	0.86[AMR][1000 genomes]
rs1927844	0.86[AMR][1000 genomes]
rs1952421	0.80[GIH][hapmap]
rs2025972	0.84[AMR][1000 genomes]
rs2077255	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2094557	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2149322	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs2181182	0.82[JPT][hapmap]
rs2182990	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs2475515	0.82[JPT][hapmap]
rs2475519	0.82[JPT][hapmap]
rs2475524	0.82[JPT][hapmap]
rs2475529	0.84[AMR][1000 genomes]
rs2475530	0.88[AMR][1000 genomes]
rs2475531	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2475532	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2475533	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2475534	0.95[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs2475536	0.89[AMR][1000 genomes]
rs2475537	0.94[JPT][hapmap];0.86[AMR][1000 genomes]
rs2475550	0.82[JPT][hapmap]
rs2475551	0.82[JPT][hapmap]
rs2479778	0.82[JPT][hapmap]
rs2479786	0.82[JPT][hapmap]
rs2479789	0.86[AMR][1000 genomes]
rs2479790	0.86[AMR][1000 genomes]
rs2479791	0.89[AMR][1000 genomes]
rs2479792	0.86[AMR][1000 genomes]
rs2479793	0.86[AMR][1000 genomes]
rs2479794	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2479795	0.86[AMR][1000 genomes]
rs2479796	0.89[AMR][1000 genomes]
rs2479798	0.84[JPT][hapmap];0.86[AMR][1000 genomes]
rs2479801	0.88[JPT][hapmap];0.89[AMR][1000 genomes]
rs2479803	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs2987345	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs326524	0.82[JPT][hapmap]
rs3751402	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829381	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4238115	0.84[AMR][1000 genomes]
rs6490346	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6490350	0.86[AMR][1000 genomes]
rs6490351	0.86[AMR][1000 genomes]
rs6490352	0.86[AMR][1000 genomes]
rs6490355	0.84[AMR][1000 genomes]
rs656803	0.84[AMR][1000 genomes]
rs68008399	0.85[ASN][1000 genomes]
rs685778	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs7317087	0.90[CHB][hapmap]
rs7324366	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs7324548	0.89[AMR][1000 genomes]
rs7326464	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7328602	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7332330	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7334488	0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7336281	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7337190	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7339409	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs745423	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs754395	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7981238	0.86[AMR][1000 genomes]
rs7981689	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs7982710	0.86[AMR][1000 genomes]
rs7985792	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs7986301	0.86[AMR][1000 genomes]
rs7987444	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs7994068	0.80[ASN][1000 genomes]
rs7994251	0.93[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs7994936	0.86[AMR][1000 genomes]
rs7995588	0.90[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap]
rs913494	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9314927	0.84[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9314932	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9314933	0.86[AMR][1000 genomes]
rs9314934	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs9506080	0.84[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9506087	0.86[ASN][1000 genomes]
rs9506098	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs9506099	0.85[JPT][hapmap];0.89[AMR][1000 genomes]
rs9506100	0.89[JPT][hapmap];0.86[AMR][1000 genomes]
rs9506101	0.85[AMR][1000 genomes]
rs9506102	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs9506103	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs9506105	0.83[JPT][hapmap];0.86[AMR][1000 genomes]
rs9506106	0.86[AMR][1000 genomes]
rs9506107	0.86[AMR][1000 genomes]
rs9506108	0.86[AMR][1000 genomes]
rs9506110	0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs9508235	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9508238	0.83[ASN][1000 genomes]
rs9508268	0.89[AMR][1000 genomes]
rs9508270	0.85[AMR][1000 genomes]
rs9508271	0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs9508272	0.84[AMR][1000 genomes]
rs9508278	0.86[AMR][1000 genomes]
rs9508279	0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs9550435	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs9550436	0.86[ASN][1000 genomes]
rs9550437	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9551598	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9551599	0.86[ASN][1000 genomes]
rs9551600	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9551602	0.85[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9578072	0.82[JPT][hapmap]
rs9578073	0.86[AMR][1000 genomes]
rs9579285	0.84[AMR][1000 genomes]
rs9579286	0.86[AMR][1000 genomes]
rs9579287	0.86[AMR][1000 genomes]
rs9579288	0.86[AMR][1000 genomes]
rs9634353	0.90[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7331544	C13orf26	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29657600-29665000	Weak transcription	Fetal Heart	heart

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