Variant report

Variant	rs73315775
Chromosome Location	chr7:18188789-18188790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18182937..18185828-chr7:18187655..18189338,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56835650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57516070	0.84[AFR][1000 genomes]
rs58138464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58495781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401540	1.00[AFR][1000 genomes]
rs6951366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952035	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315703	0.86[AFR][1000 genomes]
rs73315723	0.86[AFR][1000 genomes]
rs73315724	0.86[AFR][1000 genomes]
rs73315753	0.94[AFR][1000 genomes]
rs73315759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315795	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317805	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317832	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317845	1.00[AMR][1000 genomes]
rs73317847	1.00[AMR][1000 genomes]
rs7341461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026629	chr7:17862477-18362404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025023	chr7:17865796-18357630	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv606357	chr7:17938491-18375245	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv531013	chr7:17970218-18248642	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1022746	chr7:17978103-18233458	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
9	nsv606358	chr7:18084843-18416097	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1027814	chr7:18144199-18194899	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18185200-18191000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:18188200-18202800	Weak transcription	Aorta	Aorta

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