Variant report

Variant	rs7331646
Chromosome Location	chr13:94982396-94982397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58259931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58281983	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60386960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551861	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551866	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94976000-94983200	Enhancers	HSMMtube	muscle
2	chr13:94976200-94983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:94976600-94984000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr13:94978200-94982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:94979200-94989600	Enhancers	Fetal Muscle Leg	muscle
6	chr13:94979400-94983000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:94979400-94988600	Enhancers	Fetal Stomach	stomach
8	chr13:94979800-94982600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:94979800-94996800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:94980000-94984000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr13:94980200-94982600	Weak transcription	Fetal Heart	heart
12	chr13:94980200-94983800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr13:94980200-94984000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:94980400-94982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr13:94980400-94982600	Enhancers	Primary T cells from cord blood	blood
16	chr13:94980400-94982800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr13:94980400-94983200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:94980400-94983600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr13:94980400-94983800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr13:94980400-94983800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:94980400-94983800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:94980400-94984000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr13:94980400-95000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:94980600-94982800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr13:94980800-94983000	Enhancers	NHLF	lung
26	chr13:94980800-94983600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr13:94981000-94982800	Enhancers	Brain Hippocampus Middle	brain
28	chr13:94981000-94982800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr13:94981000-94983000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:94981000-94983000	Enhancers	HepG2	liver
31	chr13:94981000-94984000	Enhancers	Esophagus	oesophagus
32	chr13:94981200-94982800	Weak transcription	Small Intestine	intestine
33	chr13:94981200-94983800	Bivalent Enhancer	Fetal Thymus	thymus
34	chr13:94981400-94982600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr13:94981400-94983000	Enhancers	Adipose Nuclei	Adipose
36	chr13:94981400-94983000	Enhancers	NH-A	brain
37	chr13:94981400-94983000	Enhancers	NHDF-Ad	bronchial
38	chr13:94981600-94982400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:94981600-94982600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr13:94981600-94982800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr13:94981600-94982800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:94981600-94982800	Enhancers	Spleen	Spleen
43	chr13:94981600-94983000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr13:94981600-94983000	Enhancers	Hela-S3	cervix
45	chr13:94981600-94983000	Enhancers	NHEK	skin
46	chr13:94981600-94983200	Enhancers	HMEC	breast
47	chr13:94981600-94983800	Enhancers	Colon Smooth Muscle	Colon
48	chr13:94981800-94982600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:94981800-94982600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr13:94981800-94982800	Enhancers	Stomach Smooth Muscle	stomach

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