Variant report
| Variant | rs7331776 |
|---|---|
| Chromosome Location | chr13:50465821-50465822 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | BATF | chr13:50465696-50465986 | GM12878 | blood: | n/a | chr13:50465875-50465886 |
| 2 | BATF | chr13:50465648-50465989 | GM12878 | blood: | n/a | chr13:50465875-50465886 |
| No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRIM13-8 | chr13:50464545-50467516 | NR_003268 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNY4P30 | TF binding region |
| ENSG00000258941 | Chromatin interaction |
| ENSG00000150527 | Chromatin interaction |
| ENSG00000258940 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs56215346 | 1.00[ASN][1000 genomes] |
| rs7334755 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7338963 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9591310 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3436655 | chr13:50462077-50472044 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv976113 | chr13:50464858-50466977 | Inactive region | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
