Variant report

Variant	rs73319546
Chromosome Location	chr12:62636991-62636992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62633500..62639125-chr12:62640023..62644977,7	K562	blood:
2	chr12:62636676..62638829-chr12:62658286..62659994,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10784289	0.82[ASN][1000 genomes]
rs10877807	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877808	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877810	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877811	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877812	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877816	0.80[ASN][1000 genomes]
rs11174363	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174365	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11174367	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174371	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11174379	0.80[ASN][1000 genomes]
rs11174384	0.81[ASN][1000 genomes]
rs11174386	0.81[ASN][1000 genomes]
rs11174388	0.81[ASN][1000 genomes]
rs11174390	0.81[ASN][1000 genomes]
rs12227228	0.81[ASN][1000 genomes]
rs12319281	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12582117	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1320937	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1907971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279563	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2359736	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4280050	0.81[ASN][1000 genomes]
rs67753559	0.81[ASN][1000 genomes]
rs7137540	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7138634	0.81[ASN][1000 genomes]
rs7300029	0.80[ASN][1000 genomes]
rs7307385	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7312872	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035150	chr12:62615347-62785005	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62635000-62637200	Weak transcription	K562	blood
2	chr12:62635000-62638000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:62636800-62642600	Weak transcription	Hela-S3	cervix

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