Variant report

Variant	rs73319580
Chromosome Location	chr7:41098274-41098275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73319568	1.00[AMR][1000 genomes]
rs73319570	0.82[AFR][1000 genomes]
rs73319573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319574	1.00[AMR][1000 genomes]
rs73688247	1.00[AMR][1000 genomes]
rs73688253	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41088400-41099000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:41092200-41098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:41095000-41100200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:41095200-41100000	Weak transcription	Aorta	Aorta
5	chr7:41095600-41100600	Weak transcription	HSMM	muscle
6	chr7:41097800-41098600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:41097800-41098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:41098000-41098600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:41098000-41099000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr7:41098000-41099800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr7:41098200-41098400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:41098200-41098800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:41098200-41099800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:41098200-41100000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr7:41098200-41100200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links