Variant report

Variant	rs73323942
Chromosome Location	chr8:118963149-118963150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118962356..118964780-chr8:118967876..118970039,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17453427	1.00[AFR][1000 genomes]
rs56844743	0.83[AFR][1000 genomes]
rs57399568	1.00[AFR][1000 genomes]
rs60553718	0.83[AFR][1000 genomes]
rs61016956	1.00[AFR][1000 genomes]
rs73323905	0.83[AFR][1000 genomes]
rs73323906	0.83[AFR][1000 genomes]
rs73323916	1.00[AFR][1000 genomes]
rs73323935	1.00[AFR][1000 genomes]
rs73323945	1.00[AFR][1000 genomes]
rs73323948	1.00[AFR][1000 genomes]
rs73323954	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118956600-118968000	Weak transcription	Placenta	Placenta
2	chr8:118958000-118963400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:118959000-118966400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:118959000-118967800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:118959000-118967800	Weak transcription	Lung	lung
6	chr8:118959000-118968000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:118959200-118968000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:118959400-118968400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:118959400-118968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:118959600-118964800	Enhancers	NHLF	lung
11	chr8:118959600-118968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:118959800-118965600	Weak transcription	Left Ventricle	heart
13	chr8:118959800-118968400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:118960000-118965400	Weak transcription	Adipose Nuclei	Adipose
15	chr8:118960200-118966200	Enhancers	Liver	Liver
16	chr8:118960200-118967200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:118960400-118964600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:118960600-118964800	Weak transcription	Brain Germinal Matrix	brain
19	chr8:118960600-118965200	Enhancers	HepG2	liver
20	chr8:118960600-118969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:118960600-118971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:118960800-118963400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:118960800-118965600	Weak transcription	Right Ventricle	heart
24	chr8:118960800-118966600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:118961000-118965800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:118961000-118966600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:118961200-118963800	Weak transcription	Fetal Lung	lung
28	chr8:118961200-118964000	Weak transcription	HSMM	muscle
29	chr8:118961200-118964800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:118961200-118966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:118961200-118969200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:118961400-118963600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:118961400-118966000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:118961400-118967600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:118961400-118969000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:118961600-118963800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:118962000-118963600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:118962000-118964000	Enhancers	Fetal Intestine Large	intestine
39	chr8:118962200-118965000	Enhancers	Fetal Intestine Small	intestine
40	chr8:118962400-118963600	Weak transcription	NHEK	skin
41	chr8:118962400-118964400	Enhancers	HUVEC	blood vessel
42	chr8:118962400-118965600	Weak transcription	Gastric	stomach
43	chr8:118962400-118966000	Enhancers	A549	lung
44	chr8:118962400-118967200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:118962600-118963200	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr8:118962600-118963800	Enhancers	Stomach Mucosa	stomach
47	chr8:118962600-118965600	Weak transcription	Right Atrium	heart
48	chr8:118962600-118965800	Weak transcription	Psoas Muscle	Psoas
49	chr8:118962800-118963200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:118962800-118963200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links