Variant report

Variant	rs73324874
Chromosome Location	chr12:68388496-68388497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4913391	0.85[ASN][1000 genomes]
rs56370523	0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57172552	0.88[ASN][1000 genomes]
rs57346651	0.88[ASN][1000 genomes]
rs7315219	0.85[ASN][1000 genomes]
rs73324884	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73324885	0.88[ASN][1000 genomes]
rs73324894	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv975509	chr12:68382193-68405026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68385600-68391000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr12:68385600-68392000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:68386200-68391800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:68386400-68404200	Weak transcription	Primary B cells from cord blood	blood
5	chr12:68386600-68391800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:68386800-68404600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:68387000-68392200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:68387000-68395000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:68387600-68388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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