Variant report

Variant	rs73325177
Chromosome Location	chr8:121840092-121840093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121839539..121841750-chr8:121853212..121856019,2	MCF-7	breast:
2	chr8:121831609..121834330-chr8:121840009..121841536,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73325179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329211	1.00[AMR][1000 genomes]
rs73329221	1.00[AMR][1000 genomes]
rs73329229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121835600-121840200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:121835800-121840200	Enhancers	HepG2	liver
3	chr8:121835800-121840400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:121835800-121840400	Enhancers	NHDF-Ad	bronchial
5	chr8:121836000-121840200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr8:121836200-121840600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:121837200-121840200	Enhancers	Osteobl	bone
8	chr8:121837400-121840400	Enhancers	NHLF	lung
9	chr8:121837600-121843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:121838200-121840600	Enhancers	Fetal Intestine Small	intestine
11	chr8:121838200-121841200	Enhancers	Fetal Intestine Large	intestine
12	chr8:121838400-121869800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:121839000-121840600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:121839200-121840400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:121839400-121842000	Weak transcription	Psoas Muscle	Psoas
16	chr8:121839600-121840600	Enhancers	Hela-S3	cervix
17	chr8:121839600-121840800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr8:121839800-121840600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr8:121839800-121840600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:121839800-121840600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:121840000-121840200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:121840000-121840400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr8:121840000-121840400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:121840000-121840400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr8:121840000-121840600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:121840000-121840600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr8:121840000-121840600	Flanking Active TSS	Liver	Liver
28	chr8:121840000-121840600	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links