Variant report

Variant	rs73325240
Chromosome Location	chr12:63014830-63014831
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:62994945..62998693-chr12:63013652..63017048,5	MCF-7	breast:
2	chr12:62996750..63003400-chr12:63010844..63015794,7	MCF-7	breast:
3	chr12:63013376..63014961-chr12:63023890..63026114,2	K562	blood:
4	chr12:62999257..63001117-chr12:63014649..63017170,2	K562	blood:
5	chr12:63006185..63009831-chr12:63011084..63015351,5	MCF-7	breast:
6	chr12:62995882..62997676-chr12:63013967..63016676,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MON2-2	chr12:62997216-63015942	NONHSAT029092

No data

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11835000	1.00[EUR][1000 genomes]
rs163681	1.00[EUR][1000 genomes]
rs61562268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310406	1.00[EUR][1000 genomes]
rs73310429	1.00[EUR][1000 genomes]
rs73321591	1.00[EUR][1000 genomes]
rs73321596	1.00[EUR][1000 genomes]
rs73323250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73323292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73323300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62997800-63019200	Weak transcription	Spleen	Spleen
2	chr12:62998000-63019200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:62999000-63019200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:62999400-63025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:63000000-63019000	Weak transcription	Adipose Nuclei	Adipose
6	chr12:63000200-63015000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:63000200-63020600	Weak transcription	HMEC	breast
8	chr12:63000600-63019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:63000800-63024200	Weak transcription	Fetal Brain Female	brain
10	chr12:63001000-63019400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:63003200-63023800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:63005000-63017600	Weak transcription	Left Ventricle	heart
13	chr12:63005000-63019000	Weak transcription	Placenta	Placenta
14	chr12:63006200-63017600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:63007800-63024800	Weak transcription	NH-A	brain
16	chr12:63008000-63023600	Weak transcription	NHDF-Ad	bronchial
17	chr12:63010200-63025200	Weak transcription	HSMMtube	muscle
18	chr12:63010400-63015600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:63010400-63017600	Weak transcription	Lung	lung
20	chr12:63010600-63017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:63010600-63019000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:63010600-63020600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:63010600-63022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:63010800-63016000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:63011000-63017600	Weak transcription	Osteobl	bone
26	chr12:63011200-63020600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:63011400-63017600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:63011600-63023200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:63012400-63023800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:63012600-63023400	Weak transcription	A549	lung
31	chr12:63012800-63017800	Weak transcription	Stomach Mucosa	stomach
32	chr12:63013600-63015200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr12:63013600-63019000	Weak transcription	Fetal Intestine Small	intestine
34	chr12:63013800-63015200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:63013800-63025200	Weak transcription	Right Atrium	heart
36	chr12:63014200-63016200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr12:63014200-63016600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr12:63014600-63015400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr12:63014600-63016400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr12:63014600-63016400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:63014800-63015000	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr12:63014800-63015200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:63014800-63015600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr12:63014800-63018800	Weak transcription	HSMM	muscle
45	chr12:63014800-63019200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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