Variant report

Variant	rs7332589
Chromosome Location	chr13:110349448-110349449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1078563	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7332988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301405	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110341000-110352000	Weak transcription	Fetal Intestine Small	intestine
2	chr13:110342200-110351200	Strong transcription	Dnd41	blood
3	chr13:110344200-110351800	Weak transcription	Colonic Mucosa	Colon
4	chr13:110347600-110356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:110347800-110352000	Weak transcription	Stomach Mucosa	stomach
6	chr13:110348600-110349800	Weak transcription	K562	blood
7	chr13:110349000-110349600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:110349000-110353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:110349000-110353800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:110349400-110351600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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