Variant report

Variant	rs7332852
Chromosome Location	chr13:49075434-49075435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49066317..49068459-chr13:49073928..49075797,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136161	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17071908	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs751334	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7990414	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9316400	0.88[YRI][hapmap]
rs9331956	1.00[AMR][1000 genomes]
rs9331957	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9331970	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9331975	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9331983	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9331988	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9332003	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332018	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs943281	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49054000-49094000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:49063000-49087800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:49066800-49080200	Weak transcription	Colonic Mucosa	Colon
4	chr13:49067000-49080200	Weak transcription	Psoas Muscle	Psoas
5	chr13:49067000-49084200	Weak transcription	Ovary	ovary
6	chr13:49067200-49079200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr13:49067200-49079600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:49067200-49080200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr13:49067200-49105200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr13:49067200-49105400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:49067800-49078600	Weak transcription	Placenta	Placenta
12	chr13:49067800-49078600	Weak transcription	Right Atrium	heart
13	chr13:49067800-49078600	Weak transcription	Stomach Mucosa	stomach
14	chr13:49067800-49079400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:49067800-49098000	Weak transcription	Right Ventricle	heart
16	chr13:49068000-49075600	Weak transcription	Pancreas	Pancrea
17	chr13:49068000-49078200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:49068000-49078400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr13:49068000-49105600	Weak transcription	Gastric	stomach
20	chr13:49068200-49102600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr13:49068400-49081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr13:49068800-49076400	Weak transcription	Lung	lung
23	chr13:49070200-49077200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:49070400-49078600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr13:49071200-49105600	Weak transcription	Fetal Brain Male	brain
26	chr13:49071600-49078000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr13:49071600-49078600	Weak transcription	Thymus	Thymus
28	chr13:49071600-49078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:49071800-49077400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:49071800-49077600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr13:49071800-49079200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr13:49071800-49086200	Strong transcription	Fetal Stomach	stomach
33	chr13:49071800-49105800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:49072000-49077400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr13:49072000-49088400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:49072200-49078200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr13:49072200-49079400	Weak transcription	Brain Angular Gyrus	brain
38	chr13:49072200-49080200	Weak transcription	Spleen	Spleen
39	chr13:49072200-49085800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:49072200-49095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:49072400-49077200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr13:49072400-49077200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr13:49072400-49078800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr13:49072400-49079800	Weak transcription	Brain Substantia Nigra	brain
45	chr13:49072400-49080200	Weak transcription	Aorta	Aorta
46	chr13:49072400-49080400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr13:49072800-49075600	Enhancers	HSMMtube	muscle
48	chr13:49072800-49075800	Enhancers	HSMM	muscle
49	chr13:49073000-49075600	Enhancers	Osteobl	bone
50	chr13:49073000-49075800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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