Variant report

Variant	rs73331209
Chromosome Location	chr20:25053711-25053712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11904887	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11908084	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57714846	1.00[AMR][1000 genomes]
rs58083478	0.96[AFR][1000 genomes]
rs59731128	0.96[AFR][1000 genomes]
rs60687375	0.98[AFR][1000 genomes]
rs61740272	1.00[AMR][1000 genomes]
rs7273872	0.96[AFR][1000 genomes]
rs73331224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333137	1.00[AMR][1000 genomes]
rs73333167	1.00[AMR][1000 genomes]
rs73333174	1.00[AMR][1000 genomes]
rs73335011	1.00[AMR][1000 genomes]
rs73348752	0.92[AFR][1000 genomes]
rs73348757	0.96[AFR][1000 genomes]
rs73348773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8118553	0.83[AFR][1000 genomes]
rs8124085	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25046400-25057200	Weak transcription	Brain Substantia Nigra	brain
2	chr20:25046800-25057400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:25046800-25058200	Weak transcription	Right Atrium	heart
4	chr20:25048600-25056800	Weak transcription	Gastric	stomach
5	chr20:25048800-25057200	Weak transcription	Pancreas	Pancrea
6	chr20:25052200-25053800	Enhancers	A549	lung
7	chr20:25053200-25054200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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