Variant report

Variant	rs7333201
Chromosome Location	chr13:96135090-96135091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10219866	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11617639	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11619150	0.84[EUR][1000 genomes]
rs12872431	0.84[EUR][1000 genomes]
rs12876913	0.82[EUR][1000 genomes]
rs1890373	0.83[EUR][1000 genomes]
rs4351928	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4408415	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4418933	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547209	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4564445	0.83[EUR][1000 genomes]
rs4564446	0.81[EUR][1000 genomes]
rs4609701	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6492792	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6492793	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6492796	0.84[EUR][1000 genomes]
rs6492797	0.84[EUR][1000 genomes]
rs6492798	0.80[ASN][1000 genomes]
rs7322391	0.84[EUR][1000 genomes]
rs7326265	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7326546	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7328095	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7328468	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7332917	0.83[EUR][1000 genomes]
rs7338647	0.83[EUR][1000 genomes]
rs7489425	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7489518	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7982486	0.83[EUR][1000 genomes]
rs7994954	0.85[ASN][1000 genomes]
rs7995104	0.81[ASN][1000 genomes]
rs8002444	0.83[EUR][1000 genomes]
rs877960	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs877961	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs877962	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9302074	0.84[EUR][1000 genomes]
rs946231	0.84[EUR][1000 genomes]
rs9590285	0.83[EUR][1000 genomes]
rs9590286	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96131200-96137200	Weak transcription	Aorta	Aorta
3	chr13:96131200-96137200	Weak transcription	Right Atrium	heart
4	chr13:96133000-96136400	Weak transcription	K562	blood
5	chr13:96133600-96137200	Weak transcription	Spleen	Spleen
6	chr13:96133600-96137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:96133800-96135800	Weak transcription	Pancreas	Pancrea
8	chr13:96133800-96137200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:96133800-96137200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:96133800-96137200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:96133800-96137200	Weak transcription	HUVEC	blood vessel
12	chr13:96134000-96137200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:96134000-96137200	Weak transcription	HMEC	breast
14	chr13:96134000-96137400	Weak transcription	Osteobl	bone
15	chr13:96134200-96135800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:96134200-96137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:96134200-96137400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:96134400-96136000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr13:96134400-96137400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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