Variant report

Variant	rs73332169
Chromosome Location	chr8:125354009-125354010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125353704..125355913-chr8:125356266..125359505,3	MCF-7	breast:
2	chr8:125348366..125351032-chr8:125352603..125355350,3	K562	blood:
3	chr8:125348366..125351032-chr8:125353467..125355350,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10106094	1.00[EUR][1000 genomes]
rs10109751	1.00[EUR][1000 genomes]
rs16899450	1.00[EUR][1000 genomes]
rs28459835	1.00[EUR][1000 genomes]
rs28504426	1.00[EUR][1000 genomes]
rs28613347	1.00[EUR][1000 genomes]
rs28618989	1.00[EUR][1000 genomes]
rs57363865	1.00[EUR][1000 genomes]
rs59185013	1.00[AMR][1000 genomes]
rs73329564	1.00[EUR][1000 genomes]
rs73329572	1.00[EUR][1000 genomes]
rs73329581	1.00[EUR][1000 genomes]
rs73332171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73333906	1.00[EUR][1000 genomes]
rs73333919	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73333922	1.00[EUR][1000 genomes]
rs73337905	1.00[EUR][1000 genomes]
rs73343183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3384288	chr8:125350820-125377284	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125334200-125364000	Weak transcription	HUVEC	blood vessel
2	chr8:125346400-125361000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:125346400-125368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:125347200-125356400	Weak transcription	HSMMtube	muscle
5	chr8:125351400-125354600	Enhancers	A549	lung
6	chr8:125352000-125354200	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:125352000-125354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:125352000-125354800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:125352000-125366400	Weak transcription	Primary T cells from cord blood	blood
10	chr8:125352200-125357200	Weak transcription	Right Ventricle	heart
11	chr8:125352400-125354200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:125352600-125358400	Enhancers	Fetal Heart	heart
13	chr8:125353000-125376200	Weak transcription	HSMM	muscle
14	chr8:125353200-125364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:125353200-125364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:125353400-125354400	Weak transcription	Fetal Lung	lung
17	chr8:125353600-125354600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:125353600-125357600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:125353800-125354400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr8:125354000-125357800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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