Variant report

Variant	rs7333234
Chromosome Location	chr13:95885342-95885343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95880516..95882106-chr13:95884068..95886065,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12428470	0.86[EUR][1000 genomes]
rs12430658	0.96[CHB][hapmap];0.96[JPT][hapmap]
rs12854605	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1678403	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs1824911	0.86[CEU][hapmap]
rs1824913	0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs1926656	0.87[EUR][1000 genomes]
rs1926657	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153673	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2892707	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2892713	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3782963	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3782965	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3782966	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3782968	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4148455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4148463	0.82[EUR][1000 genomes]
rs4148464	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4148465	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4148467	0.82[EUR][1000 genomes]
rs4148469	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4148470	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4148471	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4238313	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4303338	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4334136	0.82[EUR][1000 genomes]
rs4371040	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4505186	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4520712	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4612933	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4636781	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4771907	0.82[EUR][1000 genomes]
rs4771908	0.87[EUR][1000 genomes]
rs4773847	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4773848	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4773849	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4773853	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4773854	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4773855	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4773857	0.85[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6492769	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6492771	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7139533	0.82[EUR][1000 genomes]
rs7321623	0.85[EUR][1000 genomes]
rs7322825	0.82[EUR][1000 genomes]
rs7324706	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7325019	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7329432	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332663	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7335147	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7335233	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7983336	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7987653	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7988494	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7999175	0.82[EUR][1000 genomes]
rs899494	0.85[CEU][hapmap]
rs899496	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs899497	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9516537	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516538	0.81[EUR][1000 genomes]
rs9516545	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs9524828	0.82[AMR][1000 genomes]
rs9524830	0.82[EUR][1000 genomes]
rs9524831	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs9524833	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9524835	0.80[EUR][1000 genomes]
rs9524836	0.81[EUR][1000 genomes]
rs9524840	0.82[EUR][1000 genomes]
rs9524845	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9524850	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9524856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9524859	0.91[JPT][hapmap]
rs9524860	0.91[JPT][hapmap]
rs9561816	0.89[ASN][1000 genomes]
rs9634642	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
2	chr13:95856400-95898200	Weak transcription	NHEK	skin
3	chr13:95859000-95885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:95859000-95887800	Weak transcription	HSMM	muscle
5	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
6	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
7	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:95861800-95899000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr13:95862000-95898200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:95862200-95898200	Weak transcription	HSMMtube	muscle
12	chr13:95863000-95898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:95863200-95895400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:95866200-95887600	Weak transcription	HUVEC	blood vessel
15	chr13:95866200-95897400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr13:95866200-95897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:95872000-95897600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:95872200-95897400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:95874800-95888200	Weak transcription	NHLF	lung
20	chr13:95874800-95897800	Weak transcription	Pancreas	Pancrea
21	chr13:95874800-95898200	Weak transcription	Colonic Mucosa	Colon
22	chr13:95875000-95897600	Weak transcription	Fetal Intestine Large	intestine
23	chr13:95879200-95887600	Weak transcription	Gastric	stomach
24	chr13:95879200-95907400	Weak transcription	Small Intestine	intestine
25	chr13:95879200-95914000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:95879400-95897400	Weak transcription	Fetal Intestine Small	intestine
27	chr13:95879600-95893800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr13:95879600-95898200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr13:95880000-95887200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
31	chr13:95880800-95885600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr13:95880800-95887800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr13:95880800-95888000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr13:95880800-95898600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr13:95880800-95902400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:95881600-95904000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:95881800-95887200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:95882200-95887600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr13:95882200-95898200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr13:95882800-95885800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:95884000-95885800	Strong transcription	K562	blood
42	chr13:95884000-95886600	Weak transcription	A549	lung
43	chr13:95884000-95895400	Weak transcription	Lung	lung
44	chr13:95884000-95898200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr13:95884200-95887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr13:95884200-95901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:95884600-95898200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr13:95884800-95885600	Weak transcription	GM12878-XiMat	blood
49	chr13:95884800-95906400	Weak transcription	Hela-S3	cervix

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