Variant report

Variant	rs7333237
Chromosome Location	chr13:48673717-48673718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3809330	0.99[ASN][1000 genomes]
rs4942742	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4942743	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4942747	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6561434	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7332147	0.84[AFR][1000 genomes]
rs7333247	0.94[AFR][1000 genomes]
rs7336214	0.82[EUR][1000 genomes]
rs7986400	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7990060	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9316348	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9526446	0.94[EUR][1000 genomes]
rs9534949	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9534950	0.82[EUR][1000 genomes]
rs9567999	0.98[ASN][1000 genomes]
rs9591135	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9595835	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7333237	MED4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48669400-48674200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:48669800-48685400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:48671400-48674400	Weak transcription	Stomach Mucosa	stomach
4	chr13:48671600-48675800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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