Variant report

Variant	rs73333013
Chromosome Location	chr8:121997664-121997665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121995306..121997978-chr8:122165835..122167630,2	MCF-7	breast:
2	chr8:121996487..121998614-chr8:122184602..122186389,2	MCF-7	breast:
3	chr8:121997014..121997767-chr8:122260718..122261626,4	MCF-7	breast:
4	chr8:121996917..121998156-chr8:122260549..122261171,3	MCF-7	breast:
5	chr8:121996889..121997670-chr8:122265200..122265709,2	MCF-7	breast:
6	chr8:121985013..121986723-chr8:121996961..121998497,2	MCF-7	breast:
7	chr8:121997176..121997957-chr8:122187230..122188110,2	MCF-7	breast:
8	chr8:121996955..121997712-chr8:122188765..122189463,2	MCF-7	breast:
9	chr8:121996950..121997814-chr8:122272391..122273660,4	MCF-7	breast:
10	chr8:121996831..121998371-chr8:122188266..122189492,12	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73333003	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121989600-121997800	Weak transcription	HSMM	muscle
2	chr8:121989800-122001200	Weak transcription	Osteobl	bone
3	chr8:121990200-122001000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:121997000-121997800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:121997000-121998000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:121997000-121998200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:121997400-121998200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:121997600-121998000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:121997600-121998400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:121997600-121999000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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