Variant report

Variant	rs73335432
Chromosome Location	chr5:126212151-126212152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126207189..126208908-chr5:126210133..126213667,3	K562	blood:
2	chr5:126211823..126213639-chr5:126216615..126218789,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57434625	1.00[AMR][1000 genomes]
rs61021974	1.00[AMR][1000 genomes]
rs61292941	1.00[AMR][1000 genomes]
rs61443321	1.00[AMR][1000 genomes]
rs6595748	1.00[AMR][1000 genomes]
rs6890333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73337224	1.00[AMR][1000 genomes]
rs73339266	1.00[AMR][1000 genomes]
rs73339276	1.00[AMR][1000 genomes]
rs73339287	1.00[AMR][1000 genomes]
rs73341204	1.00[AMR][1000 genomes]
rs9687587	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126201800-126253400	Weak transcription	A549	lung
2	chr5:126205000-126212800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:126205000-126214000	Weak transcription	Pancreas	Pancrea
4	chr5:126205200-126214400	Weak transcription	Psoas Muscle	Psoas
5	chr5:126205200-126216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:126205200-126219200	Weak transcription	Osteobl	bone
7	chr5:126205200-126245600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:126205400-126212200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:126205400-126212600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:126205400-126212600	Weak transcription	HUVEC	blood vessel
11	chr5:126205400-126214000	Weak transcription	Adipose Nuclei	Adipose
12	chr5:126205400-126214200	Enhancers	Fetal Brain Male	brain
13	chr5:126205400-126215000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:126205400-126217200	Weak transcription	Brain Anterior Caudate	brain
15	chr5:126205400-126219200	Weak transcription	Brain Substantia Nigra	brain
16	chr5:126205400-126219600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:126205400-126220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:126205400-126220800	Weak transcription	Thymus	Thymus
19	chr5:126205400-126221400	Weak transcription	Fetal Thymus	thymus
20	chr5:126205400-126245600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:126205600-126215400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:126205600-126220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:126205600-126223400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:126205600-126238200	Weak transcription	Primary T cells from cord blood	blood
25	chr5:126206400-126220400	Weak transcription	Lung	lung
26	chr5:126206800-126214600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:126206800-126220000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:126207200-126212800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:126207600-126221600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:126208000-126214600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr5:126208400-126212800	Weak transcription	Ovary	ovary
32	chr5:126208800-126213800	Weak transcription	Right Ventricle	heart
33	chr5:126209000-126219600	Weak transcription	HSMMtube	muscle
34	chr5:126209200-126214400	Strong transcription	Primary B cells from cord blood	blood
35	chr5:126209400-126213400	Weak transcription	Left Ventricle	heart
36	chr5:126210400-126212200	Enhancers	Colon Smooth Muscle	Colon
37	chr5:126210400-126212200	Enhancers	Fetal Brain Female	brain
38	chr5:126210400-126212200	Enhancers	Rectal Smooth Muscle	rectum
39	chr5:126210400-126213800	Enhancers	Placenta	Placenta
40	chr5:126210400-126214200	Strong transcription	HSMM	muscle
41	chr5:126210400-126215000	Enhancers	Fetal Heart	heart
42	chr5:126210600-126212400	Genic enhancers	K562	blood
43	chr5:126210600-126213800	Enhancers	Fetal Kidney	kidney
44	chr5:126210600-126214600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr5:126210600-126223400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:126211000-126212600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr5:126211200-126212800	Weak transcription	Spleen	Spleen
48	chr5:126211200-126213800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr5:126211200-126219600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:126211200-126221800	Weak transcription	Fetal Intestine Small	intestine

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