Variant report

Variant	rs73335540
Chromosome Location	chr12:58359979-58359980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58891938	0.85[AFR][1000 genomes]
rs73335558	1.00[AFR][1000 genomes]
rs73335576	1.00[AFR][1000 genomes]
rs73335590	1.00[AFR][1000 genomes]
rs73335594	0.92[AFR][1000 genomes]
rs73337710	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
2	nsv523853	chr12:58350631-58386722	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv975500	chr12:58351052-58362673	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58357800-58360000	Enhancers	Dnd41	blood
2	chr12:58359400-58360000	Active TSS	Placenta	Placenta
3	chr12:58359400-58360000	Active TSS	K562	blood
4	chr12:58359400-58360200	Active TSS	HepG2	liver
5	chr12:58359600-58360000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:58359600-58360000	Active TSS	A549	lung
7	chr12:58359600-58360000	Enhancers	Hela-S3	cervix
8	chr12:58359800-58360000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:58359800-58360000	Enhancers	HMEC	breast
10	chr12:58359800-58360000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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