Variant report

Variant	rs73336626
Chromosome Location	chr21:16739924-16739925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11911211	0.89[AMR][1000 genomes]
rs17464781	0.89[AMR][1000 genomes]
rs60813739	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73346504	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16738600-16747600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16738800-16740000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr21:16738800-16740000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr21:16738800-16740000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr21:16739000-16740000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr21:16739200-16740400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr21:16739400-16740000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr21:16739400-16740000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr21:16739400-16740000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr21:16739400-16740000	Enhancers	Psoas Muscle	Psoas
11	chr21:16739600-16740000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr21:16739600-16740000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr21:16739600-16740000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr21:16739600-16740000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr21:16739600-16740000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr21:16739600-16740200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr21:16739800-16740000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr21:16739800-16740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links