Variant report

Variant	rs73336865
Chromosome Location	chr8:126348767-126348768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126344683..126349065-chr8:126441599..126445443,4	MCF-7	breast:
2	chr8:126279076..126280646-chr8:126347949..126349509,2	MCF-7	breast:
3	chr8:126345301..126349169-chr8:126355838..126358002,3	K562	blood:
4	chr8:126348698..126351560-chr8:126363326..126365712,2	K562	blood:
5	chr8:126243523..126245735-chr8:126346026..126348956,2	MCF-7	breast:
6	chr8:126347469..126349929-chr8:126354038..126356701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction
ENSG00000254431	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56117234	1.00[EUR][1000 genomes]
rs56988673	1.00[EUR][1000 genomes]
rs57687393	1.00[EUR][1000 genomes]
rs57876250	1.00[EUR][1000 genomes]
rs58217279	1.00[EUR][1000 genomes]
rs58318216	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58818314	1.00[EUR][1000 genomes]
rs59667546	1.00[EUR][1000 genomes]
rs60051203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983990	1.00[EUR][1000 genomes]
rs6990205	1.00[EUR][1000 genomes]
rs6992378	1.00[EUR][1000 genomes]
rs6992389	1.00[EUR][1000 genomes]
rs7001448	1.00[EUR][1000 genomes]
rs73704923	1.00[EUR][1000 genomes]
rs73704928	1.00[EUR][1000 genomes]
rs73704930	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704939	1.00[EUR][1000 genomes]
rs73704957	1.00[EUR][1000 genomes]
rs7814242	1.00[EUR][1000 genomes]
rs7820192	1.00[EUR][1000 genomes]
rs7820336	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822467	1.00[EUR][1000 genomes]
rs7834583	1.00[EUR][1000 genomes]
rs7839038	1.00[EUR][1000 genomes]
rs7839468	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126318600-126354600	Weak transcription	Ovary	ovary
2	chr8:126322000-126374200	Weak transcription	Aorta	Aorta
3	chr8:126324200-126354200	Weak transcription	Hela-S3	cervix
4	chr8:126330800-126369200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr8:126331200-126357400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:126332600-126369400	Weak transcription	Fetal Stomach	stomach
7	chr8:126333000-126354200	Weak transcription	Fetal Lung	lung
8	chr8:126335600-126353200	Weak transcription	Primary B cells from cord blood	blood
9	chr8:126336600-126354200	Weak transcription	Spleen	Spleen
10	chr8:126340000-126354200	Weak transcription	Esophagus	oesophagus
11	chr8:126340000-126359600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:126341600-126354200	Weak transcription	Lung	lung
13	chr8:126342000-126369400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:126342400-126355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:126344400-126352200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:126344600-126362400	Weak transcription	Primary T cells from cord blood	blood
17	chr8:126344800-126353800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:126345200-126353400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:126346000-126348800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:126346000-126348800	Enhancers	Fetal Intestine Large	intestine
21	chr8:126346400-126351200	Weak transcription	Adipose Nuclei	Adipose
22	chr8:126346600-126351800	Enhancers	GM12878-XiMat	blood
23	chr8:126346800-126350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:126346800-126350800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:126346800-126351200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:126346800-126351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:126346800-126351200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:126346800-126351400	Weak transcription	Brain Angular Gyrus	brain
29	chr8:126346800-126351600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:126346800-126351800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:126346800-126351800	Weak transcription	NH-A	brain
32	chr8:126346800-126352000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:126346800-126353000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:126346800-126353200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:126346800-126353400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:126346800-126353400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:126346800-126353800	Weak transcription	Fetal Intestine Small	intestine
38	chr8:126346800-126354200	Weak transcription	Brain Substantia Nigra	brain
39	chr8:126346800-126354200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:126346800-126354400	Weak transcription	Brain Anterior Caudate	brain
41	chr8:126346800-126354400	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:126346800-126354400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:126346800-126354400	Weak transcription	Thymus	Thymus
44	chr8:126347000-126349200	Weak transcription	A549	lung
45	chr8:126347000-126349200	Enhancers	K562	blood
46	chr8:126347000-126350200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:126347000-126351400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:126347000-126351400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:126347000-126351400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:126347000-126351400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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