Variant report

Variant	rs73338109
Chromosome Location	chr5:179106507-179106508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:179101962..179108661-chr5:179122383..179128408,19	MCF-7	breast:
2	chr5:179100838..179108153-chr5:179124449..179130181,22	K562	blood:
3	chr5:179049533..179052334-chr5:179104256..179107492,4	MCF-7	breast:
4	chr5:179104047..179107935-chr5:179157751..179161258,3	K562	blood:
5	chr5:179104105..179106791-chr5:179194829..179197317,2	K562	blood:
6	chr5:179101603..179111989-chr5:179122927..179129527,32	MCF-7	breast:
7	chr5:179100989..179111182-chr5:179122076..179128627,19	K562	blood:
8	chr5:179047581..179051358-chr5:179102429..179108878,16	K562	blood:
9	chr5:179102368..179107935-chr5:179157286..179161555,5	K562	blood:
10	chr5:179104067..179106595-chr5:179220718..179223236,3	MCF-7	breast:
11	chr5:179048811..179053260-chr5:179101652..179108160,8	MCF-7	breast:
12	chr5:179104088..179107429-chr5:179222108..179224529,3	MCF-7	breast:
13	chr5:179048156..179052144-chr5:179103013..179109071,12	K562	blood:
14	chr5:178986726..178988892-chr5:179104044..179106638,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169045	Chromatin interaction
ENSG00000213316	Chromatin interaction
ENSG00000176783	Chromatin interaction
ENSG00000127022	Chromatin interaction
ENSG00000161021	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10387	1.00[EUR][1000 genomes]
rs12518252	1.00[EUR][1000 genomes]
rs12522031	1.00[EUR][1000 genomes]
rs17854722	1.00[EUR][1000 genomes]
rs1803458	1.00[EUR][1000 genomes]
rs28365148	1.00[EUR][1000 genomes]
rs34431802	1.00[EUR][1000 genomes]
rs6867485	1.00[EUR][1000 genomes]
rs6889133	1.00[EUR][1000 genomes]
rs73338108	1.00[EUR][1000 genomes]
rs7712695	1.00[EUR][1000 genomes]
rs7729244	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv830560	chr5:179039212-179175758	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179104200-179106600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:179104600-179106600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr5:179104600-179106600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr5:179104600-179106600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:179104600-179106600	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr5:179104600-179106800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr5:179104800-179106600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr5:179104800-179106600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr5:179105000-179106600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr5:179105400-179106600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:179105600-179106600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:179105600-179106600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr5:179105600-179106600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:179105600-179106600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:179105600-179106600	Flanking Active TSS	Liver	Liver
16	chr5:179105600-179106600	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr5:179105600-179106600	Flanking Active TSS	Fetal Muscle Trunk	muscle
18	chr5:179105600-179106600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr5:179105600-179106600	Flanking Active TSS	Dnd41	blood
20	chr5:179105600-179106600	Flanking Active TSS	HMEC	breast
21	chr5:179105600-179106600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr5:179105800-179106600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr5:179105800-179106600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:179105800-179106600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:179105800-179106600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr5:179105800-179106600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:179105800-179106600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr5:179105800-179106600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:179105800-179106600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr5:179105800-179106600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:179105800-179106600	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr5:179105800-179106600	Flanking Active TSS	Fetal Thymus	thymus
33	chr5:179105800-179106600	Flanking Active TSS	Pancreas	Pancrea
34	chr5:179105800-179106600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr5:179105800-179106600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr5:179105800-179106600	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr5:179105800-179106600	Flanking Active TSS	Thymus	Thymus
38	chr5:179105800-179106800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
39	chr5:179105800-179106800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr5:179105800-179106800	Flanking Active TSS	GM12878-XiMat	blood
41	chr5:179106000-179106600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:179106000-179106600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr5:179106000-179106600	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr5:179106000-179106600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr5:179106000-179106600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr5:179106000-179106600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr5:179106000-179106600	Flanking Active TSS	Fetal Stomach	stomach
48	chr5:179106000-179106600	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr5:179106000-179107000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr5:179106200-179106600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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