Variant report

Variant	rs73338869
Chromosome Location	chr8:126375305-126375306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60368750	0.85[AFR][1000 genomes]
rs73336884	0.85[AFR][1000 genomes]
rs73336887	0.85[AFR][1000 genomes]
rs73338849	0.85[AFR][1000 genomes]
rs73338850	0.85[AFR][1000 genomes]
rs73338855	0.85[AFR][1000 genomes]
rs73338856	0.85[AFR][1000 genomes]
rs73338858	0.85[AFR][1000 genomes]
rs73338860	0.82[AFR][1000 genomes]
rs73338863	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2761467	chr8:126368375-126385095	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126354000-126381200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:126354800-126379800	Weak transcription	Pancreas	Pancrea
3	chr8:126354800-126380400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:126354800-126381600	Weak transcription	Brain Anterior Caudate	brain
5	chr8:126354800-126383200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:126355200-126378800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:126358800-126376800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:126361800-126383200	Weak transcription	Psoas Muscle	Psoas
9	chr8:126365000-126379000	Weak transcription	Fetal Brain Male	brain
10	chr8:126365600-126380000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:126365600-126381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:126365800-126380000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:126367000-126381200	Weak transcription	Fetal Brain Female	brain
14	chr8:126367800-126381800	Weak transcription	HepG2	liver
15	chr8:126368200-126383200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:126369400-126375400	Strong transcription	Primary T cells from cord blood	blood
17	chr8:126369400-126375400	Strong transcription	Fetal Stomach	stomach
18	chr8:126369600-126382000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:126369800-126375400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr8:126370000-126378800	Weak transcription	Stomach Mucosa	stomach
21	chr8:126370000-126381600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:126370200-126380200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:126371000-126376000	Weak transcription	Colonic Mucosa	Colon
24	chr8:126371200-126381800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:126371400-126376200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:126372000-126375400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:126372400-126375800	Enhancers	HUVEC	blood vessel
28	chr8:126372600-126381000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:126372600-126381200	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:126372800-126375600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:126372800-126377200	Weak transcription	Ovary	ovary
32	chr8:126372800-126378200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:126372800-126378800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:126372800-126379000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:126372800-126382200	Weak transcription	Fetal Kidney	kidney
36	chr8:126372800-126383000	Weak transcription	Hela-S3	cervix
37	chr8:126372800-126383600	Weak transcription	Liver	Liver
38	chr8:126373000-126376600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:126373000-126381800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr8:126373200-126375800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:126373600-126376000	Enhancers	NH-A	brain
42	chr8:126373600-126381000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:126373800-126375400	Strong transcription	Adipose Nuclei	Adipose
44	chr8:126373800-126375600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:126373800-126375600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:126373800-126375600	Genic enhancers	A549	lung
47	chr8:126373800-126375600	Enhancers	HSMMtube	muscle
48	chr8:126374000-126375400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:126374000-126375400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:126374000-126375600	Genic enhancers	HSMM	muscle

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