Variant report
| Variant | rs73338975 |
|---|---|
| Chromosome Location | chr12:57219818-57219819 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:57210089..57211865-chr12:57218304..57220029,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11171953 | 1.00[AMR][1000 genomes] |
| rs11171963 | 1.00[AMR][1000 genomes] |
| rs11171964 | 1.00[AMR][1000 genomes] |
| rs11171969 | 1.00[AMR][1000 genomes] |
| rs11514185 | 1.00[AMR][1000 genomes] |
| rs12299402 | 1.00[AMR][1000 genomes] |
| rs12300453 | 1.00[AMR][1000 genomes] |
| rs12306275 | 1.00[AMR][1000 genomes] |
| rs12317052 | 1.00[AMR][1000 genomes] |
| rs12318649 | 1.00[AMR][1000 genomes] |
| rs57173883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60396573 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73337095 | 1.00[AMR][1000 genomes] |
| rs73338912 | 1.00[AMR][1000 genomes] |
| rs73338962 | 1.00[AMR][1000 genomes] |
| rs73338977 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73338999 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73341003 | 0.95[AFR][1000 genomes] |
| rs73341007 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:57219400-57221200 | Weak transcription | Ovary | ovary |
