Variant report

Variant	rs73339880
Chromosome Location	chr8:125994209-125994210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125992331..125994870-chr8:126000151..126005042,4	K562	blood:
2	chr8:125986784..125990540-chr8:125992857..125996075,4	K562	blood:
3	chr8:125991360..125996436-chr8:126005063..126011814,9	MCF-7	breast:
4	chr8:125987736..125990317-chr8:125991147..125995014,5	K562	blood:
5	chr8:125983916..125986929-chr8:125992858..125996868,3	K562	blood:
6	chr8:125971312..125972933-chr8:125992703..125994910,2	K562	blood:
7	chr8:125991795..125994321-chr8:125997594..126002237,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253513	Chromatin interaction
ENSG00000180938	Chromatin interaction
ENSG00000104549	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12545690	1.00[ASN][1000 genomes]
rs12546048	1.00[ASN][1000 genomes]
rs4601330	1.00[ASN][1000 genomes]
rs60187894	1.00[ASN][1000 genomes]
rs60388854	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125986000-125995600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:125986200-125995800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:125986400-125997200	ZNF genes & repeats	Liver	Liver
4	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:125986600-125995600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:125987800-125997400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr8:125988200-125995400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:125988600-125994600	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr8:125990600-125996800	Weak transcription	Fetal Brain Male	brain
10	chr8:125990600-126003000	Weak transcription	HepG2	liver
11	chr8:125993200-125994800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr8:125993600-125994400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:125993600-125994400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:125993600-125994400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:125993600-125994400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:125993600-125994400	ZNF genes & repeats	Aorta	Aorta
17	chr8:125993600-125994400	ZNF genes & repeats	Left Ventricle	heart
18	chr8:125993600-125994400	ZNF genes & repeats	Ovary	ovary
19	chr8:125993600-125994400	ZNF genes & repeats	Pancreas	Pancrea
20	chr8:125993600-125994600	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr8:125993600-125994600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr8:125993600-125994600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:125993600-125994600	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr8:125993600-125994600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr8:125993600-125994800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr8:125993600-125994800	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr8:125993600-125994800	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr8:125993600-125995200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:125993600-125995200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr8:125993800-125995400	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr8:125993800-125995400	ZNF genes & repeats	Psoas Muscle	Psoas
32	chr8:125993800-125995600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr8:125993800-125997000	Weak transcription	Brain Angular Gyrus	brain
34	chr8:125994000-125994400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
35	chr8:125994200-125994600	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr8:125994200-125995200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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