Variant report

Variant	rs73339962
Chromosome Location	chr7:5728470-5728471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:5727662..5730125-chr7:5733437..5735543,2	MCF-7	breast:
2	chr7:5726446..5729138-chr7:5729768..5731774,3	MCF-7	breast:
3	chr7:5719857..5723571-chr7:5726225..5729261,4	K562	blood:
4	chr7:5726904..5729292-chr7:5737755..5739393,2	K562	blood:
5	chr7:5725711..5728589-chr7:5731191..5734129,5	K562	blood:

Variant related genes	Relation type
ENSG00000237738	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57308117	1.00[AFR][1000 genomes]
rs58357556	0.87[AFR][1000 genomes]
rs58363330	1.00[AFR][1000 genomes]
rs60100761	1.00[AFR][1000 genomes]
rs60912551	0.81[AFR][1000 genomes]
rs73336204	0.88[AFR][1000 genomes]
rs73338056	1.00[AFR][1000 genomes]
rs73338057	1.00[AFR][1000 genomes]
rs73338065	1.00[AFR][1000 genomes]
rs73339924	1.00[AFR][1000 genomes]
rs73339926	0.89[AFR][1000 genomes]
rs73339928	0.89[AFR][1000 genomes]
rs73339931	1.00[AFR][1000 genomes]
rs73339935	1.00[AFR][1000 genomes]
rs73339936	1.00[AFR][1000 genomes]
rs73339944	1.00[AFR][1000 genomes]
rs73339951	1.00[AFR][1000 genomes]
rs73339967	1.00[AFR][1000 genomes]
rs73339969	1.00[AFR][1000 genomes]
rs73339973	0.89[AFR][1000 genomes]
rs73339992	1.00[AFR][1000 genomes]
rs73341611	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
5	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
6	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
7	nsv482449	chr7:5557585-5743673	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
8	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
9	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
10	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
13	nsv887417	chr7:5667645-5760860	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
14	nsv887418	chr7:5675305-5772551	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
15	nsv887419	chr7:5703669-5820383	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
16	nsv1028652	chr7:5706207-5769489	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
17	nsv830891	chr7:5726301-5895460	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5702000-5730600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:5713000-5730200	Weak transcription	Gastric	stomach
3	chr7:5718400-5731200	Weak transcription	HUVEC	blood vessel
4	chr7:5718400-5735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:5720200-5741400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:5720400-5728600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr7:5720600-5730400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:5721800-5730400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:5722000-5728600	Weak transcription	Colonic Mucosa	Colon
10	chr7:5723000-5740800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:5723400-5728600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:5723400-5730200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:5723400-5740600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:5723400-5766400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:5723600-5729000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:5723600-5730800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:5723600-5740600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:5723800-5729000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:5724000-5729400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:5724400-5732000	Weak transcription	Hela-S3	cervix
21	chr7:5725200-5728600	Weak transcription	Pancreas	Pancrea
22	chr7:5725400-5728600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:5725400-5728600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:5725400-5728600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:5725400-5729400	Weak transcription	Right Atrium	heart
26	chr7:5725400-5730200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:5725400-5730200	Weak transcription	Spleen	Spleen
28	chr7:5725400-5730400	Weak transcription	Fetal Brain Female	brain
29	chr7:5725400-5730600	Weak transcription	Brain Germinal Matrix	brain
30	chr7:5725400-5730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:5725400-5733000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:5725600-5728800	Strong transcription	Fetal Muscle Trunk	muscle
33	chr7:5725600-5729400	Weak transcription	Lung	lung
34	chr7:5725600-5729400	Weak transcription	Right Ventricle	heart
35	chr7:5725600-5729400	Weak transcription	HepG2	liver
36	chr7:5725600-5730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:5725600-5730400	Weak transcription	Fetal Brain Male	brain
38	chr7:5725800-5728600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:5726000-5737000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr7:5726200-5728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:5726200-5728800	Weak transcription	Fetal Thymus	thymus
42	chr7:5726200-5730400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:5726200-5731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr7:5726400-5730800	Weak transcription	Thymus	Thymus
45	chr7:5726600-5728600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:5726600-5728600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:5726600-5728600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:5726600-5730000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr7:5726600-5730200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:5726600-5730200	Weak transcription	Esophagus	oesophagus

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