Variant report

Variant	rs73340189
Chromosome Location	chr14:81323750-81323751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132220	0.86[ASN][1000 genomes]
rs1013890	0.93[ASN][1000 genomes]
rs10140915	0.86[ASN][1000 genomes]
rs10150391	0.86[ASN][1000 genomes]
rs10151557	0.93[ASN][1000 genomes]
rs1025252	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12100564	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101029	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615156	0.93[ASN][1000 genomes]
rs2217175	0.86[ASN][1000 genomes]
rs28787628	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56991751	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57742095	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60659347	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60949197	0.80[ASN][1000 genomes]
rs7144634	0.93[ASN][1000 genomes]
rs7160694	0.86[ASN][1000 genomes]
rs73340107	0.83[AFR][1000 genomes]
rs73340171	0.85[AFR][1000 genomes]
rs73340195	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340199	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342124	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342126	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342192	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73342509	0.80[ASN][1000 genomes]
rs73342556	0.93[ASN][1000 genomes]
rs73344010	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344013	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344625	0.93[ASN][1000 genomes]
rs8003193	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8021757	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:81316600-81338800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:81317000-81326000	Weak transcription	Dnd41	blood
6	chr14:81317800-81328400	Weak transcription	HSMM	muscle
7	chr14:81317800-81333400	Weak transcription	Psoas Muscle	Psoas
8	chr14:81317800-81334400	Weak transcription	A549	lung
9	chr14:81318000-81332800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:81320000-81331800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:81320600-81326000	Weak transcription	NHDF-Ad	bronchial
12	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
13	chr14:81322000-81324000	Strong transcription	Thymus	Thymus
14	chr14:81322400-81326000	Weak transcription	Fetal Thymus	thymus
15	chr14:81322600-81326000	Weak transcription	NHEK	skin
16	chr14:81323600-81323800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:81323600-81330000	Weak transcription	Hela-S3	cervix

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