Variant report

Variant	rs73341641
Chromosome Location	chr7:5770560-5770561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10260656	1.00[AMR][1000 genomes]
rs10275016	1.00[AMR][1000 genomes]
rs10276016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441129	1.00[AMR][1000 genomes]
rs11981617	1.00[AMR][1000 genomes]
rs58571278	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964579	1.00[AMR][1000 genomes]
rs73341665	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
5	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
6	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
7	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
8	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
9	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
12	nsv887418	chr7:5675305-5772551	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
13	nsv887419	chr7:5703669-5820383	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
14	nsv830891	chr7:5726301-5895460	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1028601	chr7:5748982-5919098	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
16	nsv1034215	chr7:5748982-6056619	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
17	nsv1016690	chr7:5749222-6056619	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
18	nsv1027679	chr7:5760731-6056619	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
19	nsv970440	chr7:5762947-5773677	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5737600-5774200	Strong transcription	Dnd41	blood
2	chr7:5746000-5771200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:5753200-5794400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:5755000-5780800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:5758800-5770800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:5758800-5770800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:5758800-5771000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:5761600-5785600	Weak transcription	Fetal Brain Male	brain
9	chr7:5761800-5783000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:5762000-5820400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:5762200-5777200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:5762800-5786000	Weak transcription	Fetal Kidney	kidney
13	chr7:5762800-5790200	Weak transcription	Small Intestine	intestine
14	chr7:5763400-5770800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:5763600-5773000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:5765200-5778400	Weak transcription	NHEK	skin
17	chr7:5765200-5780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:5765200-5790400	Weak transcription	Psoas Muscle	Psoas
19	chr7:5766400-5770800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:5767400-5780000	Weak transcription	Brain Germinal Matrix	brain
21	chr7:5767400-5780200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:5767600-5778400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:5768600-5773000	Strong transcription	Hela-S3	cervix
24	chr7:5768800-5770800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:5768800-5776600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:5768800-5778400	Weak transcription	Left Ventricle	heart
27	chr7:5768800-5778600	Weak transcription	Lung	lung
28	chr7:5768800-5780600	Weak transcription	Esophagus	oesophagus
29	chr7:5768800-5798200	Weak transcription	Colonic Mucosa	Colon
30	chr7:5769000-5771000	Weak transcription	GM12878-XiMat	blood
31	chr7:5769000-5777000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:5769000-5778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:5769000-5778600	Weak transcription	Fetal Brain Female	brain
34	chr7:5769000-5783800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:5769000-5785600	Weak transcription	Brain Angular Gyrus	brain
36	chr7:5769200-5770600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:5769200-5770800	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:5769200-5771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:5769200-5771400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:5769200-5771600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:5769200-5772000	Weak transcription	Fetal Stomach	stomach
42	chr7:5769200-5772200	Weak transcription	Osteobl	bone
43	chr7:5769200-5772400	Weak transcription	Fetal Muscle Leg	muscle
44	chr7:5769200-5775200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:5769200-5775400	Weak transcription	Fetal Intestine Small	intestine
46	chr7:5769200-5775800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:5769200-5776800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:5769200-5777200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:5769200-5777200	Weak transcription	HSMMtube	muscle
50	chr7:5769200-5778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links