Variant report

Variant	rs73343859
Chromosome Location	chr10:112691862-112691863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112548423..112550436-chr10:112690605..112692339,2	K562	blood:
2	chr10:112691219..112695362-chr10:112695848..112700041,5	MCF-7	breast:
3	chr10:112677343..112684329-chr10:112684383..112692296,16	K562	blood:
4	chr10:112691670..112694592-chr10:112699465..112702013,2	K562	blood:

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000234118	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11195405	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11558147	0.87[ASN][1000 genomes]
rs11592715	0.84[ASN][1000 genomes]
rs11599619	0.86[ASN][1000 genomes]
rs12569835	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571756	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572049	0.95[ASN][1000 genomes]
rs17128130	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17128212	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17128356	0.91[EUR][1000 genomes]
rs2295992	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4391757	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55794717	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56233990	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56784382	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56946887	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58164562	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072811	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7073594	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7073880	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73343848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73343879	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73345956	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74156313	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7902347	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112680600-112692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:112680600-112696600	Weak transcription	Lung	lung
3	chr10:112680600-112706800	Weak transcription	Esophagus	oesophagus
4	chr10:112680800-112704600	Weak transcription	Aorta	Aorta
5	chr10:112681000-112692200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:112681000-112692400	Weak transcription	Right Atrium	heart
7	chr10:112681000-112696400	Weak transcription	Fetal Stomach	stomach
8	chr10:112681000-112696600	Weak transcription	Thymus	Thymus
9	chr10:112681000-112704600	Weak transcription	Right Ventricle	heart
10	chr10:112681200-112692000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:112682000-112700600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:112682000-112702000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:112682000-112702200	Weak transcription	Brain Germinal Matrix	brain
14	chr10:112682000-112704600	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:112682000-112708400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:112683000-112692000	Weak transcription	HSMM	muscle
18	chr10:112683000-112700800	Weak transcription	Dnd41	blood
19	chr10:112683200-112694000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:112684200-112692000	Weak transcription	Hela-S3	cervix
21	chr10:112684200-112692200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:112684200-112696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:112684200-112700800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:112684200-112701000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:112684400-112696600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:112684400-112712600	Weak transcription	HepG2	liver
27	chr10:112684800-112696400	Weak transcription	Spleen	Spleen
28	chr10:112685200-112719200	Weak transcription	A549	lung
29	chr10:112685600-112695800	Weak transcription	Fetal Intestine Small	intestine
30	chr10:112687600-112697800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:112688200-112696800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:112688600-112696000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:112688600-112696400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:112688600-112696600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:112688600-112697000	Weak transcription	Fetal Brain Female	brain
36	chr10:112688800-112693400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:112689200-112697200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:112689400-112692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:112689400-112692000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr10:112689400-112704600	Weak transcription	Left Ventricle	heart
41	chr10:112689600-112693600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:112689600-112701600	Weak transcription	Primary B cells from cord blood	blood
43	chr10:112689600-112714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:112689800-112692000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:112689800-112702200	Weak transcription	Primary T cells from cord blood	blood
46	chr10:112690000-112692000	Enhancers	Liver	Liver
47	chr10:112690200-112707800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:112690400-112692000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:112690400-112692600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr10:112690600-112692400	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links