Variant report

Variant	rs73343952
Chromosome Location	chr8:125661021-125661022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125654543..125656464-chr8:125660143..125662820,2	MCF-7	breast:
2	chr8:125658235..125661140-chr8:125662893..125664695,2	K562	blood:
3	chr8:125658978..125663524-chr8:125664698..125669211,7	MCF-7	breast:
4	chr8:125654604..125657235-chr8:125659497..125661452,3	K562	blood:
5	chr8:125659876..125664799-chr8:125825896..125829544,9	K562	blood:
6	chr8:125628662..125631478-chr8:125658483..125661336,2	MCF-7	breast:
7	chr8:125649100..125650648-chr8:125660221..125663028,2	K562	blood:
8	chr8:125550141..125552215-chr8:125659914..125663008,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000147687	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11775349	0.80[ASN][1000 genomes]
rs11783312	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11785482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4007936	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871527	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57174114	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59676492	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62530691	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62530692	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997870	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7843950	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027585	chr8:125627924-125707738	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125641200-125664200	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:125643800-125666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:125645600-125661800	Enhancers	Fetal Thymus	thymus
4	chr8:125649800-125662800	Weak transcription	Pancreas	Pancrea
5	chr8:125650000-125665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:125650000-125665200	Weak transcription	Fetal Intestine Small	intestine
7	chr8:125650000-125666800	Weak transcription	Esophagus	oesophagus
8	chr8:125651400-125663400	Weak transcription	Placenta	Placenta
9	chr8:125653800-125661200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:125654000-125666800	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:125655000-125666800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:125655000-125672200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:125655200-125661400	Weak transcription	Right Atrium	heart
14	chr8:125655200-125666400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:125655200-125667400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:125655200-125667400	Weak transcription	NHDF-Ad	bronchial
17	chr8:125655400-125661600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:125655600-125663000	Weak transcription	Stomach Mucosa	stomach
19	chr8:125655800-125661400	Weak transcription	Lung	lung
20	chr8:125656400-125661800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:125656600-125661400	Weak transcription	Adipose Nuclei	Adipose
22	chr8:125656800-125666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:125656800-125666200	Weak transcription	HMEC	breast
24	chr8:125657000-125661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:125657000-125661600	Weak transcription	Fetal Brain Female	brain
26	chr8:125657000-125667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:125657000-125667600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:125657400-125661800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:125657400-125666000	Weak transcription	HepG2	liver
30	chr8:125657600-125661200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:125657800-125661800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:125658000-125662800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:125658200-125661600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:125658400-125661600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:125658600-125663600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr8:125658600-125667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:125658800-125662800	Weak transcription	Primary T cells from cord blood	blood
38	chr8:125659000-125662600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:125659000-125665000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:125659200-125661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:125659600-125662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:125660000-125664200	Enhancers	Left Ventricle	heart
43	chr8:125660000-125664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:125660200-125662200	Enhancers	Brain Anterior Caudate	brain
45	chr8:125660200-125662400	Enhancers	Brain Germinal Matrix	brain
46	chr8:125660200-125663200	Enhancers	Brain Hippocampus Middle	brain
47	chr8:125660200-125664200	Enhancers	Right Ventricle	heart
48	chr8:125660200-125664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:125660200-125664400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr8:125660400-125661600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links