Variant report

Variant	rs73345906
Chromosome Location	chr10:112732485-112732486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112728533..112731147-chr10:112731609..112733166,2	K562	blood:
2	chr10:112725818..112728345-chr10:112732470..112734478,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56786997	0.88[AFR][1000 genomes]
rs56875008	0.80[AFR][1000 genomes]
rs61156928	0.88[AFR][1000 genomes]
rs61333522	1.00[AMR][1000 genomes]
rs73343813	1.00[AMR][1000 genomes]
rs73343847	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343855	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343895	0.98[AFR][1000 genomes]
rs73343897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343899	0.86[AFR][1000 genomes]
rs73345916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345924	0.88[AFR][1000 genomes]
rs73347720	0.82[AFR][1000 genomes]
rs73360854	1.00[AMR][1000 genomes]
rs73360865	1.00[AMR][1000 genomes]
rs73360869	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1035422	chr10:112724159-112764594	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv1036202	chr10:112726834-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1051595	chr10:112730022-112789048	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
2	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
4	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:112707200-112737600	Weak transcription	Psoas Muscle	Psoas
7	chr10:112707200-112738800	Weak transcription	NH-A	brain
8	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
10	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:112710000-112736400	Weak transcription	HSMM	muscle
12	chr10:112711800-112735600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:112712600-112737200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:112712600-112737600	Weak transcription	HSMMtube	muscle
15	chr10:112712600-112737800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:112712600-112751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:112712600-112755000	Weak transcription	Fetal Thymus	thymus
18	chr10:112712800-112736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:112712800-112738000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:112712800-112751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:112719400-112760800	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:112719800-112735800	Weak transcription	Fetal Stomach	stomach
23	chr10:112719800-112737600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:112719800-112759200	Weak transcription	Fetal Lung	lung
25	chr10:112720800-112737600	Weak transcription	Ovary	ovary
26	chr10:112721600-112737600	Weak transcription	Fetal Heart	heart
27	chr10:112722800-112736600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:112723200-112783000	Weak transcription	Small Intestine	intestine
29	chr10:112723600-112732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:112724400-112737000	Weak transcription	Right Atrium	heart
31	chr10:112724400-112737800	Weak transcription	Stomach Mucosa	stomach
32	chr10:112724600-112748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:112724800-112738200	Weak transcription	Primary T cells from cord blood	blood
34	chr10:112724800-112739600	Weak transcription	Aorta	Aorta
35	chr10:112724800-112746600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:112724800-112760200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:112725000-112737200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:112725400-112737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:112726600-112764000	Weak transcription	HUVEC	blood vessel
40	chr10:112727000-112737800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:112727200-112737400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:112727200-112740600	Weak transcription	Dnd41	blood
43	chr10:112727400-112745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:112727400-112764400	Weak transcription	Adipose Nuclei	Adipose
45	chr10:112727600-112748800	Weak transcription	NHDF-Ad	bronchial
46	chr10:112727800-112737600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:112727800-112739400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr10:112728000-112738800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:112728200-112737600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:112728200-112748400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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