Variant report

Variant	rs73346107
Chromosome Location	chr12:58689361-58689362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73346135	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58680600-58690200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:58680600-58690400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:58680800-58690200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:58686200-58690200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:58686200-58690200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:58686400-58690000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:58689000-58691200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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