Variant report

Variant	rs7335067
Chromosome Location	chr13:76343933-76343934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2031242	0.85[AFR][1000 genomes]
rs474240	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs527731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs583368	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs658746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs660942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs674611	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7321748	0.81[YRI][hapmap]
rs9544044	0.85[AFR][1000 genomes]
rs9600555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9600558	1.00[JPT][hapmap]
rs9600561	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76308200-76345200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:76323800-76356600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:76337000-76344400	Weak transcription	Ovary	ovary
4	chr13:76337400-76344200	Weak transcription	Placenta	Placenta
5	chr13:76337400-76347600	Weak transcription	Gastric	stomach
6	chr13:76337600-76344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:76338000-76344600	Weak transcription	HMEC	breast
8	chr13:76338000-76344600	Weak transcription	NHEK	skin
9	chr13:76338000-76356800	Weak transcription	Brain Anterior Caudate	brain
10	chr13:76338000-76362800	Weak transcription	Fetal Stomach	stomach
11	chr13:76338600-76345000	Weak transcription	Colonic Mucosa	Colon
12	chr13:76338600-76356600	Weak transcription	Left Ventricle	heart
13	chr13:76338800-76371000	Weak transcription	Fetal Thymus	thymus
14	chr13:76339000-76348200	Enhancers	Fetal Intestine Small	intestine
15	chr13:76339800-76344600	Weak transcription	Fetal Heart	heart
16	chr13:76340000-76363600	Weak transcription	Thymus	Thymus
17	chr13:76340200-76344200	Weak transcription	Fetal Lung	lung
18	chr13:76340200-76347200	Weak transcription	Pancreas	Pancrea
19	chr13:76340200-76349200	Enhancers	NHDF-Ad	bronchial
20	chr13:76340600-76344400	Weak transcription	NH-A	brain
21	chr13:76340800-76344200	Weak transcription	Small Intestine	intestine
22	chr13:76340800-76347200	Enhancers	HepG2	liver
23	chr13:76341200-76346000	Weak transcription	HUVEC	blood vessel
24	chr13:76341800-76352800	Weak transcription	Primary T cells from cord blood	blood
25	chr13:76342000-76344200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:76342000-76346000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:76342200-76344000	Weak transcription	Stomach Mucosa	stomach
28	chr13:76342200-76344400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr13:76342200-76344400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr13:76342400-76357800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr13:76343000-76345200	Enhancers	Duodenum Mucosa	Duodenum
32	chr13:76343000-76345800	Enhancers	NHLF	lung
33	chr13:76343000-76348200	Enhancers	Fetal Intestine Large	intestine
34	chr13:76343000-76349200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:76343200-76344000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr13:76343200-76344400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:76343200-76345000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:76343200-76345800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:76343200-76346800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:76343400-76344600	Enhancers	Psoas Muscle	Psoas
41	chr13:76343400-76344600	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr13:76343400-76344600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr13:76343400-76345200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr13:76343400-76346400	Enhancers	Liver	Liver
45	chr13:76343400-76346800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr13:76343400-76347400	Enhancers	Fetal Kidney	kidney
47	chr13:76343400-76347800	Enhancers	HSMMtube	muscle
48	chr13:76343400-76370800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr13:76343600-76344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:76343600-76344000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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