Variant report

Variant	rs73350799
Chromosome Location	chr21:17365059-17365060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59597289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60453206	1.00[AMR][1000 genomes]
rs73350802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352639	1.00[AMR][1000 genomes]
rs73352665	1.00[AMR][1000 genomes]
rs73356686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3376626	chr21:17363331-17365429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17363400-17365200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr21:17363400-17365600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr21:17363400-17365600	Enhancers	HUVEC	blood vessel
4	chr21:17363600-17365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:17364400-17365200	Enhancers	HSMM	muscle
6	chr21:17364600-17365200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr21:17364600-17365200	Enhancers	Osteobl	bone
8	chr21:17364800-17365200	Enhancers	Hela-S3	cervix
9	chr21:17364800-17365200	Enhancers	NH-A	brain
10	chr21:17364800-17368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:17365000-17367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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