Variant report

Variant	rs73350853
Chromosome Location	chr7:52655853-52655854
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73336750	1.00[AMR][1000 genomes]
rs73338760	1.00[AMR][1000 genomes]
rs73340763	1.00[AMR][1000 genomes]
rs73350137	1.00[AMR][1000 genomes]
rs73350847	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52654200-52656000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:52654600-52656400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:52654600-52656600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:52654600-52657600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:52655200-52656800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:52655400-52656000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:52655800-52656400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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