Variant report

Variant	rs73351272
Chromosome Location	chr7:50560477-50560478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11575332	1.00[AMR][1000 genomes]
rs11575339	1.00[AMR][1000 genomes]
rs11575368	1.00[AMR][1000 genomes]
rs11575374	1.00[AMR][1000 genomes]
rs11575378	1.00[AMR][1000 genomes]
rs11575437	1.00[AMR][1000 genomes]
rs6262	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv606905	chr7:50544063-50565963	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50545800-50565800	Weak transcription	HepG2	liver
3	chr7:50548800-50564400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:50556800-50561000	Weak transcription	Ovary	ovary
5	chr7:50557400-50564200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50559000-50561000	Enhancers	Stomach Mucosa	stomach
7	chr7:50559600-50561200	Strong transcription	Duodenum Mucosa	Duodenum
8	chr7:50559600-50564200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:50559600-50564800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:50559800-50561200	Enhancers	K562	blood
11	chr7:50559800-50561400	Strong transcription	Fetal Intestine Large	intestine
12	chr7:50559800-50562800	Strong transcription	Fetal Intestine Small	intestine
13	chr7:50560200-50560600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:50560400-50561000	Enhancers	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links