Variant report

Variant	rs73352529
Chromosome Location	chr8:132091066-132091067
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57169529	1.00[AMR][1000 genomes]
rs58609754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59681306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61693766	1.00[AMR][1000 genomes]
rs72716447	0.85[AFR][1000 genomes]
rs73346502	1.00[AMR][1000 genomes]
rs73348508	1.00[AMR][1000 genomes]
rs73348521	1.00[AMR][1000 genomes]
rs73348527	1.00[AMR][1000 genomes]
rs73348547	1.00[AMR][1000 genomes]
rs73352503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352534	1.00[AMR][1000 genomes]
rs73352545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354536	0.92[AFR][1000 genomes]
rs73354538	0.85[AFR][1000 genomes]
rs73354541	0.85[AFR][1000 genomes]
rs73358404	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891449	chr8:132011279-132128690	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1020360	chr8:132068287-132195108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1030858	chr8:132070866-132195108	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3523677	chr8:132090370-132094268	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3523676	chr8:132090820-132094218	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:132079600-132093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:132089800-132091600	Enhancers	Cortex derived primary cultured neurospheres	brain

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