Variant report

Variant	rs73352806
Chromosome Location	chr12:74729301-74729302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:74728722..74730831-chr12:74734863..74737720,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10506691	1.00[EUR][1000 genomes]
rs11179938	1.00[AMR][1000 genomes]
rs11179961	1.00[AMR][1000 genomes]
rs11179988	1.00[EUR][1000 genomes]
rs11179989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297190	1.00[AMR][1000 genomes]
rs12299538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12309372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12317803	1.00[EUR][1000 genomes]
rs12318521	1.00[EUR][1000 genomes]
rs12320395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522126	1.00[EUR][1000 genomes]
rs17113226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982597	1.00[EUR][1000 genomes]
rs59771966	1.00[EUR][1000 genomes]
rs59917367	1.00[EUR][1000 genomes]
rs7133693	1.00[EUR][1000 genomes]
rs7315551	1.00[EUR][1000 genomes]
rs73335503	1.00[EUR][1000 genomes]
rs73350030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350868	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350901	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73351746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73352828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74105463	1.00[EUR][1000 genomes]
rs74106716	1.00[EUR][1000 genomes]
rs7955373	1.00[EUR][1000 genomes]
rs7961059	1.00[EUR][1000 genomes]
rs7971410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7973162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652042	1.00[AMR][1000 genomes]
rs980785	1.00[EUR][1000 genomes]
rs9919749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv899290	chr12:74666737-74729489	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv899291	chr12:74666737-74740958	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1051702	chr12:74674733-74732069	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428595	chr12:74679884-74858160	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv523765	chr12:74680999-74749476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1052996	chr12:74710909-74891621	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv541540	chr12:74710909-74891621	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74726200-74731400	Weak transcription	HMEC	breast
2	chr12:74728800-74731600	Weak transcription	A549	lung
3	chr12:74729000-74731200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:74729000-74731400	Weak transcription	HUVEC	blood vessel
5	chr12:74729000-74732800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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